Gene loci information

Transcript annotation

  • This transcript has been annotated as Alpha-mannosidase 2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g100 g100.t2 isoform g100.t2 932587 934202
chr_3 g100 g100.t2 exon g100.t2.exon1 932587 933074
chr_3 g100 g100.t2 cds g100.t2.CDS1 932657 933074
chr_3 g100 g100.t2 exon g100.t2.exon2 933129 933387
chr_3 g100 g100.t2 cds g100.t2.CDS2 933129 933387
chr_3 g100 g100.t2 exon g100.t2.exon3 933965 934202
chr_3 g100 g100.t2 cds g100.t2.CDS3 933965 934202
chr_3 g100 g100.t2 TSS g100.t2 NA NA
chr_3 g100 g100.t2 TTS g100.t2 NA NA

Sequences

>g100.t2 Gene=g100 Length=985
ATGACATCAAATGAAGTTAAGAATGATTATGAAGTTAGATTAGTTTCAAAGCCAGAAAGT
TTCAAAAAATTTATTCCAAAAATACACAAAAAGCTTTCGACTGCAAAAAGAAAATTTGAT
TTTTCAAATTTAACTTGTGATATTGACACAAATTTTGTTCCTGAACCAGACAATCAAATG
TTGAATATTTTAAATACTTTACCATTTGATGACAAAGATGGAGGCGTTTGGAAACAAGGT
TTCAACATTTCATATGATCAATCACAATGGAATTCAACAAATAAATTAAAAGTGTTTATT
GTTATGCACAGTCATAATGATCCAGGATGGCTGTACACATTTGATGAATATTATGAAAAA
CAAACAAAGAATATTTTTGAAAACATGTTGAAATATTTGACCAAAAATGAAAAACTCAAA
CTCATTTGGGCTGAAATTGTTTATTTTTCAAAATGGTTTGATTCTTTAGATGAAATTTCC
AAAGAAAAAGTTAAAATGTTAATAGAAAGAAAACAACTTGATTTTGTTACCGGTGGTTGG
GTAATGCCAGATGAAGCAGCAAGTCATTGGTATTCAGTGTTATTGGCATTAACAGAAGGT
CAAACATGGTTAAAAAATGTTCTAAATATCACAAACATCAAAAGTTCTTGGGCAATTGAT
CCCTTCGGCCATTCTTCATCTTTTCCTTATATTCTTAAACATGCCGGTTTTGAAAATCTT
CTTATACAAAGGACACATTATTCGACTAAAAAATATTTTGCAAAACGCCGTGAGCTGGAA
TTTAAATGGAGACAATTATGGGATTTGCGAGGAAAAACTGAATTATTTACTCATATGATG
CCTTTTTATAGCTATGATATTCCTCATACTTGTGGTATGAATTTTTTGTTTTTACTTGTT
ACAAGAAAATTTTAAAAGTTTAGAAAAATTTGTTGATAAAATTTTTTTTATAATTTAGTA
TTTTAAATTTAAAATATTTTTTAGG

>g100.t2 Gene=g100 Length=304
MTSNEVKNDYEVRLVSKPESFKKFIPKIHKKLSTAKRKFDFSNLTCDIDTNFVPEPDNQM
LNILNTLPFDDKDGGVWKQGFNISYDQSQWNSTNKLKVFIVMHSHNDPGWLYTFDEYYEK
QTKNIFENMLKYLTKNEKLKLIWAEIVYFSKWFDSLDEISKEKVKMLIERKQLDFVTGGW
VMPDEAASHWYSVLLALTEGQTWLKNVLNITNIKSSWAIDPFGHSSSFPYILKHAGFENL
LIQRTHYSTKKYFAKRRELEFKWRQLWDLRGKTELFTHMMPFYSYDIPHTCGMNFLFLLV
TRKF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g100.t2 Gene3D G3DSA:3.20.110.10 Glycoside hydrolase 38 45 302 0
2 g100.t2 PANTHER PTHR11607:SF57 ALPHA-MANNOSIDASE 2X 51 292 0
3 g100.t2 PANTHER PTHR11607 ALPHA-MANNOSIDASE 51 292 0
1 g100.t2 Pfam PF01074 Glycosyl hydrolases family 38 N-terminal domain 97 294 0
4 g100.t2 SUPERFAMILY SSF88713 Glycoside hydrolase/deacetylase 54 294 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006013 mannose metabolic process BP
GO:0005975 carbohydrate metabolic process BP
GO:0003824 catalytic activity MF
GO:0004559 alpha-mannosidase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed