Gene loci information

Transcript annotation

  • This transcript has been annotated as 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10026 g10026.t1 TSS g10026.t1 6793820 6793820
chr_1 g10026 g10026.t1 isoform g10026.t1 6794108 6798782
chr_1 g10026 g10026.t1 exon g10026.t1.exon1 6794108 6794637
chr_1 g10026 g10026.t1 cds g10026.t1.CDS1 6794108 6794637
chr_1 g10026 g10026.t1 exon g10026.t1.exon2 6794779 6795864
chr_1 g10026 g10026.t1 cds g10026.t1.CDS2 6794779 6795864
chr_1 g10026 g10026.t1 exon g10026.t1.exon3 6795950 6796090
chr_1 g10026 g10026.t1 cds g10026.t1.CDS3 6795950 6796090
chr_1 g10026 g10026.t1 exon g10026.t1.exon4 6796155 6796271
chr_1 g10026 g10026.t1 cds g10026.t1.CDS4 6796155 6796271
chr_1 g10026 g10026.t1 exon g10026.t1.exon5 6796361 6796657
chr_1 g10026 g10026.t1 cds g10026.t1.CDS5 6796361 6796657
chr_1 g10026 g10026.t1 exon g10026.t1.exon6 6797110 6797956
chr_1 g10026 g10026.t1 cds g10026.t1.CDS6 6797110 6797956
chr_1 g10026 g10026.t1 exon g10026.t1.exon7 6798064 6798562
chr_1 g10026 g10026.t1 cds g10026.t1.CDS7 6798064 6798562
chr_1 g10026 g10026.t1 exon g10026.t1.exon8 6798622 6798782
chr_1 g10026 g10026.t1 cds g10026.t1.CDS8 6798622 6798782
chr_1 g10026 g10026.t1 TTS g10026.t1 6799073 6799073

Sequences

>g10026.t1 Gene=g10026 Length=3678
ATGATGTCAGTAATGAATGTTCCAAGTTTGGGTGAGAATGAGCAAATATGCAATTATTTA
GAACGAGGAACGTTGATCACAAAGTATTATCTAAAGAAGCGACCCGAGAAGAAATATTTA
AGTTTAAGACGAGAAACGAGACAAATTCTTGTAAGTCAATTATCTGCTGCATCAACGTCA
TCAAATGCATCATCATCATTGTCGACAAGTGGCAATGCAACTCGTAACAATTATGATTTT
GCCCTTGAGTTGAGAGAAGTCAAAGAGATTCGTTTCGGAAAGAATTCGAAAGATTTTGAT
AAATGGGAAGAGAGCAAGAAAGTCGACCATCAGAAATGTTTTGTAATTCTTTATGGCAAT
GAATTCAAGCTAAAAACCTTTTCTGTCGTTGCGCATTCTGAGAAGGAGTGCGAAATGTGG
ATAAAAGGCATAAAATATATGTTGAATGATACAATTTTCTCACCATATCCGCTTCAAGTT
GAGCGTTGGCTTCGTAAAGAATTCTATGGAATGGAAAATGCCAATAAAGCCGTTACGTTG
AAAGAAGTGAAGGCCTTTCTACCGAAAATCAATTTCAAAATATCGACATCGGAACTCAAT
AGACATTTTCAAATTGTCGACACAAGAAAACGAAATGAAATTGGCTTTGATGATTTTACT
CGTCTCTATCAAAATTTAATTAATGTTCCGACATTCCTCTTTGAATGTTTCAACAGTAAA
ATGCCCTATTCGGAAGGAGAAACTGTCACATTAAAAGAATTTCAAAAATTTCTTCTAACA
GAACAGGGTGATGAAAAGGCCAATGATGACCAAACAATATCAGCTTTCATACGTGATTTT
GTGCAAGATACACAACGTGAAGTGCAAGAGCCTTATTTTACTGTCAATGAATTTGTTGAT
TATTTGTTCTCTAAACAAAATGAAATATGGGATAGCAAATGTAATCGTGTATATCATGAT
ATGACAAAGCCACTTTGTGATTATTGGATTTCATCTTCACATAATACATATCTCTTTGGT
GATCAATTTTCAAGTGAATCTTCCACAGAAGCATACATTCGTGCACTTCGAATGGGCTGC
CGTTGCATTGAACTGGATTGTTGGGATGGTCCAGATTCGCCACTAATTTTTCATGGTCAT
ACATTTACTTCCAAAATAAAGTTCAAAGATGTCATCAAAACAATTAAAGAACACGCTTTC
GTAACATCCCAATTTCCATTGATTCTCTCAATCGAACAAAATTGTTCTCTCGTGCAGCAA
AGAAAAATGGCACAATTGATGCTAGAAGTTTTCGGTGATATGTTACTAACACAACCAATT
GAGAAAAATGAAACAAAATTGCCATCGCCATATGCGTTAAGACGTAAAATAATTTTAAAG
CACAAAAAGTTGATCTATTATGAGGGTGCTAGTCACAATGCCTTTTTCGTAGATGATTCT
AGTGACAGTTTAACAAGAAGCGATAGTCTCATGAGACAAGATGACAATGAGCTAGATATT
CGTAATACTGTTAAAAATGGCATTCTCTATCTGGAAGATCCTGTCGATAAAGTTTGGAAT
CCGCACTTTTTCGTTCTGACACCAAACAATAAAATCTTTTATACTGACAGTTATCGATTG
GATCGCGATGACGCACGCGATGAAGAGGTTGAAAATATTCTAACTCGCCCAAAAGAACAA
ACATCAAATGATGAACTTCATTTTGGTGAAAATTGGTTTCATGGAAAATTATCTGGTGGC
AGAGAAGAAGCTGAAAGTTTGTTACGTCAGTACTCTCATTTGGGTGATGGAACATTTTTA
GTGCGTGAATCTGTCACATTTGTCGGCGACTATTGCTTATCGTTTTGGAGAAAAGGCAAA
CCAAATCATTGCAGAATTAAGATAAAGCAGGAACGCGGCAGCACAAAGTATTATTTGTTT
GAAAATGTATTGTTCGATAACCTCTACAGCTTAATCATGTATTACCGACAAAATCTATTT
CGATCAGCTGAGTTTTCGATAATTCTTAAAGAACCCGTGCCTCAACAAAATAAACATGAA
ATGTGCGAATGGTACTTTGCAAATACAACACGTGAACAGAGCGAACTAATTCTGTCACAA
ATGCCTAATGATGGTAGCTTTCTTGTGCGTCCAAGCGACAAGGGTCAAAATACCTATGTC
ATATCATTCCGAGCACATCAAAAAATTAAACATTGCCTTATAAAAAGTGAGGGACGACTT
TATGAAGTTGGAACAATGAAGTTTGAAAGCTTAATTGACCTCGTGAACTTTTATATGAAA
TTTCCTCTTTATCGTAAAGTGAAATTAAGTTATCCAGTCTCAAAGGATATTGTAAAACGA
ATGGGAAATCTCTCATTGCTTGAGGATGATAATGCTTACTCTTCATCTGGTTATATGGAT
CCATCAACAGTCGCTCGAGACAAAATTACGGTTAAAGCACTTTATGATTACAAAGCACAA
CACGACGATGAACTTTCTTTCTGTAAGCATGCCATCATAACGAACGTTGATAAGAAGAAC
AATGAATTATGGTGGCGTGGAGATTATGGCGGTAAAATTCAGCATTACTTTCCCGCAAAT
TATGTACAAGAGATCAATGGCCTTGACTGTCTCGAATGCGACGAAAATTCGACTGATTCC
GTATTAGGAAATTTGCAAAAAGGTTCTATAGATGTTAGTGGTGCTGTCGTTGATCTTGCA
CTCTTACCGGGTGGTGATATTGAATGGATTCTTAGAATTCAAACTCCCGCAATGCAGAGC
ATTTTTGAGGTTGGCGTACAGACAAAAGAAAGTGCAATTGAATGGCGTCAAGCTATTATG
GAAGCAGCACAAAATGCAAGTGTCTTAGAAAATGAACGTCGAAAGCTCGAGCGAAACTCA
AAAGTGGCAAAAGAAATGTCTGATTTGATTATTTATTGCCGCAGTGTGCCCTTCAAAAAC
GCAGGATGGGTCTTTTATGAAATGTCATCATTTGCAGAAACCAAGGCCGAAAAGTATTTT
TTGCAGCAGGAAATGAAGCTCTTCTTACGCTACCATCGTAATCAAATAAGCCGCGTTTAT
CCAAAAGGCCAACGTCTCGACTCATCAAACTTTAATCCATTGCCGTTTTGGAACATTGGC
TCCCAAATGATTGCTCTCAATTTCCAAACTCCTGATAAGCCCATGCAAATTTTAATGGGA
AAGTTTCGAGATAACGGTGGATGTGGATTTCTGTTGAAACCCGAGTTTATGCTACGTGAT
GATTTTGATCCAAATGATGCATCATTCGATGGCTTGGATCAAGTTCTCGTTACAATACGT
ATTATTGCTGCACGGCATCTATTTAAAAGTGGGCGCACCAATATATCAAGCCCATTGGTT
GAAATTGAAGTGCTTGGCGCGCCTTTTGATACTGGAATCAAACATCGAACGAAAGCCATT
TCTGATAATGGCTTTAATCCGATTTGGAATGAAATATGTGAATTTAGAATTAGAAATTCT
GCATTTGCTTTATTACGTTTTGAGGTGCAAGACGAAGACATGTTTGGCGAGAAGAATATG
ATCGGACAGGCAGTTTTTCCAATCAATTGTCTCCGCACTGGCTATCGAAGTGTTCCATTA
AGAAATAAATACAGCGAAGAACTTGAATTGGCTGCACTTCTTGTACATTTTGCAATAAAA
CAAGTCAAAGAGTACTAA

>g10026.t1 Gene=g10026 Length=1225
MMSVMNVPSLGENEQICNYLERGTLITKYYLKKRPEKKYLSLRRETRQILVSQLSAASTS
SNASSSLSTSGNATRNNYDFALELREVKEIRFGKNSKDFDKWEESKKVDHQKCFVILYGN
EFKLKTFSVVAHSEKECEMWIKGIKYMLNDTIFSPYPLQVERWLRKEFYGMENANKAVTL
KEVKAFLPKINFKISTSELNRHFQIVDTRKRNEIGFDDFTRLYQNLINVPTFLFECFNSK
MPYSEGETVTLKEFQKFLLTEQGDEKANDDQTISAFIRDFVQDTQREVQEPYFTVNEFVD
YLFSKQNEIWDSKCNRVYHDMTKPLCDYWISSSHNTYLFGDQFSSESSTEAYIRALRMGC
RCIELDCWDGPDSPLIFHGHTFTSKIKFKDVIKTIKEHAFVTSQFPLILSIEQNCSLVQQ
RKMAQLMLEVFGDMLLTQPIEKNETKLPSPYALRRKIILKHKKLIYYEGASHNAFFVDDS
SDSLTRSDSLMRQDDNELDIRNTVKNGILYLEDPVDKVWNPHFFVLTPNNKIFYTDSYRL
DRDDARDEEVENILTRPKEQTSNDELHFGENWFHGKLSGGREEAESLLRQYSHLGDGTFL
VRESVTFVGDYCLSFWRKGKPNHCRIKIKQERGSTKYYLFENVLFDNLYSLIMYYRQNLF
RSAEFSIILKEPVPQQNKHEMCEWYFANTTREQSELILSQMPNDGSFLVRPSDKGQNTYV
ISFRAHQKIKHCLIKSEGRLYEVGTMKFESLIDLVNFYMKFPLYRKVKLSYPVSKDIVKR
MGNLSLLEDDNAYSSSGYMDPSTVARDKITVKALYDYKAQHDDELSFCKHAIITNVDKKN
NELWWRGDYGGKIQHYFPANYVQEINGLDCLECDENSTDSVLGNLQKGSIDVSGAVVDLA
LLPGGDIEWILRIQTPAMQSIFEVGVQTKESAIEWRQAIMEAAQNASVLENERRKLERNS
KVAKEMSDLIIYCRSVPFKNAGWVFYEMSSFAETKAEKYFLQQEMKLFLRYHRNQISRVY
PKGQRLDSSNFNPLPFWNIGSQMIALNFQTPDKPMQILMGKFRDNGGCGFLLKPEFMLRD
DFDPNDASFDGLDQVLVTIRIIAARHLFKSGRTNISSPLVEIEVLGAPFDTGIKHRTKAI
SDNGFNPIWNEICEFRIRNSAFALLRFEVQDEDMFGEKNMIGQAVFPINCLRTGYRSVPL
RNKYSEELELAALLVHFAIKQVKEY

Protein features from InterProScan

Transcript Database ID Name Start End E.value
39 g10026.t1 CDD cd13362 PH_PLC_gamma 20 158 5.75033E-56
38 g10026.t1 CDD cd16201 EFh_PI-PLCgamma 163 306 1.04595E-60
42 g10026.t1 CDD cd08592 PI-PLCc_gamma 319 471 1.29566E-99
43 g10026.t1 CDD cd10341 SH2_N-SH2_PLC_gamma_like 567 665 1.85666E-52
41 g10026.t1 CDD cd11825 SH3_PLCgamma 810 864 1.61555E-29
40 g10026.t1 CDD cd00275 C2_PLC_like 1095 1220 2.77897E-50
36 g10026.t1 Coils Coil Coil 932 966 -
31 g10026.t1 Gene3D G3DSA:2.30.29.30 - 9 152 5.0E-11
32 g10026.t1 Gene3D G3DSA:1.10.238.10 - 169 318 1.8E-7
28 g10026.t1 Gene3D G3DSA:3.20.20.190 Phosphatidylinositol (PI) phosphodiesterase 319 497 1.3E-68
30 g10026.t1 Gene3D G3DSA:2.30.29.30 - 498 553 8.4E-8
33 g10026.t1 Gene3D G3DSA:3.30.505.10 SHC Adaptor Protein 554 678 9.4E-35
34 g10026.t1 Gene3D G3DSA:3.30.505.10 SHC Adaptor Protein 679 785 6.7E-28
29 g10026.t1 Gene3D G3DSA:2.30.30.40 SH3 Domains 805 868 1.7E-19
27 g10026.t1 Gene3D G3DSA:3.20.20.190 Phosphatidylinositol (PI) phosphodiesterase 921 1089 1.0E-42
35 g10026.t1 Gene3D G3DSA:2.60.40.150 - 1090 1225 7.2E-41
7 g10026.t1 PANTHER PTHR10336:SF173 1-PHOSPHATIDYLINOSITOL 4,5-BISPHOSPHATE PHOSPHODIESTERASE GAMMA-1 14 1224 6.2E-273
8 g10026.t1 PANTHER PTHR10336 PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 14 1224 6.2E-273
37 g10026.t1 PIRSF PIRSF000952 PLC-gamma 1 1225 0.0
15 g10026.t1 PRINTS PR00390 Phospholipase C signature 324 342 1.3E-45
19 g10026.t1 PRINTS PR00390 Phospholipase C signature 350 370 1.3E-45
18 g10026.t1 PRINTS PR00390 Phospholipase C signature 446 463 1.3E-45
11 g10026.t1 PRINTS PR00401 SH2 domain signature 572 586 1.5E-6
10 g10026.t1 PRINTS PR00401 SH2 domain signature 596 606 1.5E-6
13 g10026.t1 PRINTS PR00401 SH2 domain signature 608 619 1.5E-6
12 g10026.t1 PRINTS PR00401 SH2 domain signature 728 738 1.5E-6
9 g10026.t1 PRINTS PR00401 SH2 domain signature 747 761 1.5E-6
16 g10026.t1 PRINTS PR00390 Phospholipase C signature 1016 1037 1.3E-45
14 g10026.t1 PRINTS PR00390 Phospholipase C signature 1037 1055 1.3E-45
17 g10026.t1 PRINTS PR00390 Phospholipase C signature 1186 1196 1.3E-45
2 g10026.t1 Pfam PF00388 Phosphatidylinositol-specific phospholipase C, X domain 321 463 1.4E-62
4 g10026.t1 Pfam PF00017 SH2 domain 572 655 6.8E-21
3 g10026.t1 Pfam PF00017 SH2 domain 684 758 3.3E-17
1 g10026.t1 Pfam PF00018 SH3 domain 812 859 2.0E-11
6 g10026.t1 Pfam PF00387 Phosphatidylinositol-specific phospholipase C, Y domain 966 1076 2.0E-37
5 g10026.t1 Pfam PF00168 C2 domain 1097 1194 1.6E-14
58 g10026.t1 ProSiteProfiles PS50003 PH domain profile. 18 149 10.26
55 g10026.t1 ProSiteProfiles PS50007 Phosphatidylinositol-specific phospholipase X-box domain profile. 319 462 56.392
56 g10026.t1 ProSiteProfiles PS50001 Src homology 2 (SH2) domain profile. 572 673 21.379
57 g10026.t1 ProSiteProfiles PS50001 Src homology 2 (SH2) domain profile. 684 773 18.413
53 g10026.t1 ProSiteProfiles PS50002 Src homology 3 (SH3) domain profile. 806 867 25.224
54 g10026.t1 ProSiteProfiles PS50008 Phosphatidylinositol-specific phospholipase Y-box domain profile. 966 1077 45.023
52 g10026.t1 ProSiteProfiles PS50004 C2 domain profile. 1085 1185 15.799
49 g10026.t1 SMART SM00233 PH_update 19 151 3.0E-5
46 g10026.t1 SMART SM00148 plcx_3 319 462 2.8E-84
51 g10026.t1 SMART SM00252 SH2_5 570 661 4.2E-25
50 g10026.t1 SMART SM00252 SH2_5 682 764 2.7E-25
48 g10026.t1 SMART SM00233 PH_update 778 946 130.0
47 g10026.t1 SMART SM00326 SH3_2 809 866 4.2E-16
45 g10026.t1 SMART SM00149 plcy_3 966 1078 9.0E-63
44 g10026.t1 SMART SM00239 C2_3c 1096 1200 9.6E-16
20 g10026.t1 SUPERFAMILY SSF50729 PH domain-like 14 147 3.91E-16
26 g10026.t1 SUPERFAMILY SSF47473 EF-hand 178 321 1.74E-20
23 g10026.t1 SUPERFAMILY SSF51695 PLC-like phosphodiesterases 319 1079 1.7E-119
21 g10026.t1 SUPERFAMILY SSF55550 SH2 domain 570 676 4.58E-24
22 g10026.t1 SUPERFAMILY SSF55550 SH2 domain 662 774 7.54E-29
24 g10026.t1 SUPERFAMILY SSF50044 SH3-domain 803 867 1.71E-18
25 g10026.t1 SUPERFAMILY SSF49562 C2 domain (Calcium/lipid-binding domain, CaLB) 1097 1219 7.02E-27

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0009395 phospholipid catabolic process BP
GO:0008081 phosphoric diester hydrolase activity MF
GO:0007165 signal transduction BP
GO:0005515 protein binding MF
GO:0004435 phosphatidylinositol phospholipase C activity MF
GO:0035556 intracellular signal transduction BP
GO:0006629 lipid metabolic process BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values