General information for g10026.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1.
Parent gene
- The parent gene g10026 is located on chr_1: 6798067..6798782 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10026 | g10026.t2 | TSS | g10026.t2 | 6793820 | 6793820 |
| chr_1 | g10026 | g10026.t2 | isoform | g10026.t2 | 6794108 | 6794785 |
| chr_1 | g10026 | g10026.t2 | exon | g10026.t2.exon1 | 6794108 | 6794637 |
| chr_1 | g10026 | g10026.t2 | cds | g10026.t2.CDS1 | 6794108 | 6794637 |
| chr_1 | g10026 | g10026.t2 | exon | g10026.t2.exon2 | 6794779 | 6794785 |
| chr_1 | g10026 | g10026.t2 | cds | g10026.t2.CDS2 | 6794779 | 6794785 |
| chr_1 | g10026 | g10026.t2 | TTS | g10026.t2 | NA | NA |
Sequences
>g10026.t2 Gene=g10026 Length=537
ATGATGTCAGTAATGAATGTTCCAAGTTTGGGTGAGAATGAGCAAATATGCAATTATTTA
GAACGAGGAACGTTGATCACAAAGTATTATCTAAAGAAGCGACCCGAGAAGAAATATTTA
AGTTTAAGACGAGAAACGAGACAAATTCTTGTAAGTCAATTATCTGCTGCATCAACGTCA
TCAAATGCATCATCATCATTGTCGACAAGTGGCAATGCAACTCGTAACAATTATGATTTT
GCCCTTGAGTTGAGAGAAGTCAAAGAGATTCGTTTCGGAAAGAATTCGAAAGATTTTGAT
AAATGGGAAGAGAGCAAGAAAGTCGACCATCAGAAATGTTTTGTAATTCTTTATGGCAAT
GAATTCAAGCTAAAAACCTTTTCTGTCGTTGCGCATTCTGAGAAGGAGTGCGAAATGTGG
ATAAAAGGCATAAAATATATGTTGAATGATACAATTTTCTCACCATATCCGCTTCAAGTT
GAGCGTTGGCTTCGTAAAGAATTCTATGGAATGGAAAATGCCAATAAAGCCGTTACG
>g10026.t2 Gene=g10026 Length=179
MMSVMNVPSLGENEQICNYLERGTLITKYYLKKRPEKKYLSLRRETRQILVSQLSAASTS
SNASSSLSTSGNATRNNYDFALELREVKEIRFGKNSKDFDKWEESKKVDHQKCFVILYGN
EFKLKTFSVVAHSEKECEMWIKGIKYMLNDTIFSPYPLQVERWLRKEFYGMENANKAVT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g10026.t2 | CDD | cd13362 | PH_PLC_gamma | 20 | 158 | 0.00000 |
| 5 | g10026.t2 | Gene3D | G3DSA:2.30.29.30 | - | 9 | 152 | 0.00000 |
| 1 | g10026.t2 | PANTHER | PTHR10336:SF173 | 1-PHOSPHATIDYLINOSITOL 4,5-BISPHOSPHATE PHOSPHODIESTERASE GAMMA-1 | 13 | 176 | 0.00000 |
| 2 | g10026.t2 | PANTHER | PTHR10336 | PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN | 13 | 176 | 0.00000 |
| 6 | g10026.t2 | ProSiteProfiles | PS50003 | PH domain profile. | 18 | 149 | 10.26000 |
| 4 | g10026.t2 | SMART | SM00233 | PH_update | 19 | 151 | 0.00003 |
| 3 | g10026.t2 | SUPERFAMILY | SSF50729 | PH domain-like | 14 | 147 | 0.00000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0007165 | signal transduction | BP |
| GO:0004435 | phosphatidylinositol phospholipase C activity | MF |
| GO:0035556 | intracellular signal transduction | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed