Gene loci information

Transcript annotation

  • This transcript has been annotated as 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10026 g10026.t4 TSS g10026.t4 6793820 6793820
chr_1 g10026 g10026.t4 isoform g10026.t4 6794785 6795489
chr_1 g10026 g10026.t4 exon g10026.t4.exon1 6794785 6795489
chr_1 g10026 g10026.t4 cds g10026.t4.CDS1 6794969 6795487
chr_1 g10026 g10026.t4 TTS g10026.t4 NA NA

Sequences

>g10026.t4 Gene=g10026 Length=705
GTTGAAAGAAGTGAAGGCCTTTCTACCGAAAATCAATTTCAAAATATCGACATCGGAACT
CAATAGACATTTTCAAATTGTCGACACAAGAAAACGAAATGAAATTGGCTTTGATGATTT
TACTCGTCTCTATCAAAATTTAATTAATGTTCCGACATTCCTCTTTGAATGTTTCAACAG
TAAAATGCCCTATTCGGAAGGAGAAACTGTCACATTAAAAGAATTTCAAAAATTTCTTCT
AACAGAACAGGGTGATGAAAAGGCCAATGATGACCAAACAATATCAGCTTTCATACGTGA
TTTTGTGCAAGATACACAACGTGAAGTGCAAGAGCCTTATTTTACTGTCAATGAATTTGT
TGATTATTTGTTCTCTAAACAAAATGAAATATGGGATAGCAAATGTAATCGTGTATATCA
TGATATGACAAAGCCACTTTGTGATTATTGGATTTCATCTTCACATAATACATATCTCTT
TGGTGATCAATTTTCAAGTGAATCTTCCACAGAAGCATACATTCGTGCACTTCGAATGGG
CTGCCGTTGCATTGAACTGGATTGTTGGGATGGTCCAGATTCGCCACTAATTTTTCATGG
TCATACATTTACTTCCAAAATAAAGTTCAAAGATGTCATCAAAACAATTAAAGAACACGC
TTTCGTAACATCCCAATTTCCATTGATTCTCTCAATCGAACAAAA

>g10026.t4 Gene=g10026 Length=173
MPYSEGETVTLKEFQKFLLTEQGDEKANDDQTISAFIRDFVQDTQREVQEPYFTVNEFVD
YLFSKQNEIWDSKCNRVYHDMTKPLCDYWISSSHNTYLFGDQFSSESSTEAYIRALRMGC
RCIELDCWDGPDSPLIFHGHTFTSKIKFKDVIKTIKEHAFVTSQFPLILSIEQ

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g10026.t4 CDD cd08558 PI-PLCc_eukaryota 78 172 0.000000
9 g10026.t4 Gene3D G3DSA:1.10.238.10 - 2 75 0.000052
8 g10026.t4 Gene3D G3DSA:3.20.20.190 Phosphatidylinositol (PI) phosphodiesterase 76 173 0.000000
2 g10026.t4 PANTHER PTHR10336:SF159 1-PHOSPHATIDYLINOSITOL 4,5-BISPHOSPHATE PHOSPHODIESTERASE GAMMA 5 173 0.000000
3 g10026.t4 PANTHER PTHR10336 PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 5 173 0.000000
5 g10026.t4 PRINTS PR00390 Phospholipase C signature 84 102 0.000000
4 g10026.t4 PRINTS PR00390 Phospholipase C signature 110 130 0.000000
1 g10026.t4 Pfam PF00388 Phosphatidylinositol-specific phospholipase C, X domain 81 173 0.000000
12 g10026.t4 ProSiteProfiles PS50007 Phosphatidylinositol-specific phospholipase X-box domain profile. 79 172 42.042000
11 g10026.t4 SMART SM00148 plcx_3 79 173 0.000000
7 g10026.t4 SUPERFAMILY SSF47473 EF-hand 6 81 0.000000
6 g10026.t4 SUPERFAMILY SSF51695 PLC-like phosphodiesterases 79 172 0.000000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0008081 phosphoric diester hydrolase activity MF
GO:0035556 intracellular signal transduction BP
GO:0006629 lipid metabolic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed