Gene loci information

Transcript annotation

  • This transcript has been annotated as 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10026 g10026.t6 isoform g10026.t6 6797462 6798782
chr_1 g10026 g10026.t6 exon g10026.t6.exon1 6797462 6797956
chr_1 g10026 g10026.t6 cds g10026.t6.CDS1 6797690 6797956
chr_1 g10026 g10026.t6 exon g10026.t6.exon2 6798064 6798562
chr_1 g10026 g10026.t6 cds g10026.t6.CDS2 6798064 6798562
chr_1 g10026 g10026.t6 exon g10026.t6.exon3 6798622 6798782
chr_1 g10026 g10026.t6 cds g10026.t6.CDS3 6798622 6798782
chr_1 g10026 g10026.t6 TTS g10026.t6 6799073 6799073
chr_1 g10026 g10026.t6 TSS g10026.t6 NA NA

Sequences

>g10026.t6 Gene=g10026 Length=1155
GAATTATGGTGGCGTGGAGATTATGGCGGTAAAATTCAGCATTACTTTCCCGCAAATTAT
GTACAAGAGATCAATGGCCTTGACTGTCTCGAATGCGACGAAAATTCGACTGATTCCGTA
TTAGGAAATTTGCAAAAAGGTTCTATAGATGTTAGTGGTGCTGTCGTTGATCTTGCACTC
TTACCGGGTGGTGATATTGAATGGATTCTTAGAATTCAAACTCCCGCAATGCAGAGCATT
TTTGAGGTTGGCGTACAGACAAAAGAAAGTGCAATTGAATGGCGTCAAGCTATTATGGAA
GCAGCACAAAATGCAAGTGTCTTAGAAAATGAACGTCGAAAGCTCGAGCGAAACTCAAAA
GTGGCAAAAGAAATGTCTGATTTGATTATTTATTGCCGCAGTGTGCCCTTCAAAAACGCA
GGATGGGTCTTTTATGAAATGTCATCATTTGCAGAAACCAAGGCCGAAAAGTATTTTTTG
CAGCAGGAAATGAAGCTCTTCTTACGCTACCATCGTAATCAAATAAGCCGCGTTTATCCA
AAAGGCCAACGTCTCGACTCATCAAACTTTAATCCATTGCCGTTTTGGAACATTGGCTCC
CAAATGATTGCTCTCAATTTCCAAACTCCTGATAAGCCCATGCAAATTTTAATGGGAAAG
TTTCGAGATAACGGTGGATGTGGATTTCTGTTGAAACCCGAGTTTATGCTACGTGATGAT
TTTGATCCAAATGATGCATCATTCGATGGCTTGGATCAAGTTCTCGTTACAATACGTATT
ATTGCTGCACGGCATCTATTTAAAAGTGGGCGCACCAATATATCAAGCCCATTGGTTGAA
ATTGAAGTGCTTGGCGCGCCTTTTGATACTGGAATCAAACATCGAACGAAAGCCATTTCT
GATAATGGCTTTAATCCGATTTGGAATGAAATATGTGAATTTAGAATTAGAAATTCTGCA
TTTGCTTTATTACGTTTTGAGGTGCAAGACGAAGACATGTTTGGCGAGAAGAATATGATC
GGACAGGCAGTTTTTCCAATCAATTGTCTCCGCACTGGCTATCGAAGTGTTCCATTAAGA
AATAAATACAGCGAAGAACTTGAATTGGCTGCACTTCTTGTACATTTTGCAATAAAACAA
GTCAAAGAGTACTAA

>g10026.t6 Gene=g10026 Length=308
MQSIFEVGVQTKESAIEWRQAIMEAAQNASVLENERRKLERNSKVAKEMSDLIIYCRSVP
FKNAGWVFYEMSSFAETKAEKYFLQQEMKLFLRYHRNQISRVYPKGQRLDSSNFNPLPFW
NIGSQMIALNFQTPDKPMQILMGKFRDNGGCGFLLKPEFMLRDDFDPNDASFDGLDQVLV
TIRIIAARHLFKSGRTNISSPLVEIEVLGAPFDTGIKHRTKAISDNGFNPIWNEICEFRI
RNSAFALLRFEVQDEDMFGEKNMIGQAVFPINCLRTGYRSVPLRNKYSEELELAALLVHF
AIKQVKEY

Protein features from InterProScan

Transcript Database ID Name Start End E.value
13 g10026.t6 CDD cd00275 C2_PLC_like 178 303 7.07531E-55
12 g10026.t6 Coils Coil Coil 15 49 -
10 g10026.t6 Gene3D G3DSA:3.20.20.190 Phosphatidylinositol (PI) phosphodiesterase 11 172 9.2E-44
11 g10026.t6 Gene3D G3DSA:2.60.40.150 - 173 308 6.5E-42
3 g10026.t6 PANTHER PTHR10336:SF159 1-PHOSPHATIDYLINOSITOL 4,5-BISPHOSPHATE PHOSPHODIESTERASE GAMMA 6 302 5.8E-111
4 g10026.t6 PANTHER PTHR10336 PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 6 302 5.8E-111
6 g10026.t6 PRINTS PR00390 Phospholipase C signature 99 120 5.0E-19
7 g10026.t6 PRINTS PR00390 Phospholipase C signature 120 138 5.0E-19
5 g10026.t6 PRINTS PR00390 Phospholipase C signature 269 279 5.0E-19
2 g10026.t6 Pfam PF00387 Phosphatidylinositol-specific phospholipase C, Y domain 49 159 2.1E-38
1 g10026.t6 Pfam PF00168 C2 domain 180 277 1.7E-15
17 g10026.t6 ProSiteProfiles PS50008 Phosphatidylinositol-specific phospholipase Y-box domain profile. 49 160 45.023
16 g10026.t6 ProSiteProfiles PS50004 C2 domain profile. 168 268 15.799
15 g10026.t6 SMART SM00149 plcy_3 49 161 9.0E-63
14 g10026.t6 SMART SM00239 C2_3c 179 283 9.6E-16
8 g10026.t6 SUPERFAMILY SSF51695 PLC-like phosphodiesterases 18 169 3.92E-47
9 g10026.t6 SUPERFAMILY SSF49562 C2 domain (Calcium/lipid-binding domain, CaLB) 180 302 6.4E-28

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0008081 phosphoric diester hydrolase activity MF
GO:0007165 signal transduction BP
GO:0004435 phosphatidylinositol phospholipase C activity MF
GO:0035556 intracellular signal transduction BP
GO:0006629 lipid metabolic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values