General information for g10031.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative E3 ubiquitin-protein ligase MYLIP-A.
Parent gene
- The parent gene g10031 is located on chr_1: 6860654..6861536 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10031 | g10031.t5 | isoform | g10031.t5 | 6860654 | 6861536 |
| chr_1 | g10031 | g10031.t5 | exon | g10031.t5.exon1 | 6860654 | 6861054 |
| chr_1 | g10031 | g10031.t5 | cds | g10031.t5.CDS1 | 6860926 | 6861054 |
| chr_1 | g10031 | g10031.t5 | exon | g10031.t5.exon2 | 6861119 | 6861411 |
| chr_1 | g10031 | g10031.t5 | cds | g10031.t5.CDS2 | 6861119 | 6861411 |
| chr_1 | g10031 | g10031.t5 | exon | g10031.t5.exon3 | 6861473 | 6861536 |
| chr_1 | g10031 | g10031.t5 | cds | g10031.t5.CDS3 | 6861473 | 6861536 |
| chr_1 | g10031 | g10031.t5 | TTS | g10031.t5 | 6861730 | 6861730 |
| chr_1 | g10031 | g10031.t5 | TSS | g10031.t5 | NA | NA |
Sequences
>g10031.t5 Gene=g10031 Length=758
CTGCAAAATATTGGCTTCTCGAAGAATTTTCAACACTCAAGGGCTTTGGTGAGGAAACAT
TTGAGGGAACTTTAATTTCGGAAAGTGAATCAAAAGTTACACAACAGCGTAATGAAAAAA
TTAGAATTGCTGTAAATTCACAAGGTCTTAATGTGAACAAACTAGAAAGTCATCAAAAAT
TTTCAATTCCATTTGCGGCAGTTGAATCTGCAAAATCTCTAAGACGGTGTTTTCACCTTT
GCTATTTAAATGAAAACTATACTGATTCAAGTATGATCATCAAGTTCACATCACATCGTA
TTGCAGGAACTTTGTATCGTGCTTTAACAGAAAAGCATTCATTCTATAGCTGTGAGACTG
TCCATAAGAATGTCGAGACACAATTTATTCGCGACTTAAAGGGTACAATTGTATCAATGT
TCAATGAGGATACAGAATTAGGAAAAAAATATGTTTTTGATATAAGACTAACGTTTAGAG
AATTGTATGACAATTCAAGACGAATACTTCATGCCAAAGGTATTGATGTTTCGAAAAGGC
CAAGTGTACAAGATGATATGGGTCAAACATCAACTTGTGAATTAGATAACAATAAGCGAA
TCGATATGACATGCTCAATTTGTATGGACCAAAAAATTGATACTCTTTTCTTACCCTGTG
CTCATTTATCATGTTGTAGGAATTGTGCTGGCAAATGTGAAATTTGTCCTCTATGTCGTA
AGAGTATAGCATCAACTTCCTTAGTATATTTTACATGA
>g10031.t5 Gene=g10031 Length=161
MIIKFTSHRIAGTLYRALTEKHSFYSCETVHKNVETQFIRDLKGTIVSMFNEDTELGKKY
VFDIRLTFRELYDNSRRILHAKGIDVSKRPSVQDDMGQTSTCELDNNKRIDMTCSICMDQ
KIDTLFLPCAHLSCCRNCAGKCEICPLCRKSIASTSLVYFT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g10031.t5 | Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain | 90 | 161 | 0.000 |
| 3 | g10031.t5 | PANTHER | PTHR23280:SF13 | E3 UBIQUITIN-PROTEIN LIGASE MYLIP | 3 | 99 | 0.000 |
| 5 | g10031.t5 | PANTHER | PTHR23280 | 4.1 G PROTEIN | 3 | 99 | 0.000 |
| 2 | g10031.t5 | PANTHER | PTHR23280:SF13 | E3 UBIQUITIN-PROTEIN LIGASE MYLIP | 107 | 161 | 0.000 |
| 4 | g10031.t5 | PANTHER | PTHR23280 | 4.1 G PROTEIN | 107 | 161 | 0.000 |
| 1 | g10031.t5 | Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 111 | 154 | 0.000 |
| 8 | g10031.t5 | ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 114 | 149 | 10.704 |
| 6 | g10031.t5 | SUPERFAMILY | SSF57850 | RING/U-box | 113 | 153 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
