Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10043 g10043.t5 isoform g10043.t5 7014484 7016077
chr_1 g10043 g10043.t5 exon g10043.t5.exon1 7014484 7015012
chr_1 g10043 g10043.t5 cds g10043.t5.CDS1 7014806 7015012
chr_1 g10043 g10043.t5 exon g10043.t5.exon2 7015090 7015178
chr_1 g10043 g10043.t5 cds g10043.t5.CDS2 7015090 7015178
chr_1 g10043 g10043.t5 exon g10043.t5.exon3 7015280 7015470
chr_1 g10043 g10043.t5 cds g10043.t5.CDS3 7015280 7015470
chr_1 g10043 g10043.t5 exon g10043.t5.exon4 7015551 7016077
chr_1 g10043 g10043.t5 cds g10043.t5.CDS4 7015551 7015759
chr_1 g10043 g10043.t5 TTS g10043.t5 7016079 7016079
chr_1 g10043 g10043.t5 TSS g10043.t5 NA NA

Sequences

>g10043.t5 Gene=g10043 Length=1336
ATGGAAGTTCATACTGCTTTAGTGCTTACCGTGCAACTTATTGCTCTATTCTCGATCGCA
GGCGCTCTGTTACTCTACTTGCTATGCAAAGTTAAGGGTTCACGAAATGTGACTCTAGAT
CCACGTTGTGGTTCCATTCTAATTACATCTGCAGATACGGCACTCGGCCTTCAACTGTCG
ACCTATCTCGCATCAAAAGGATGTCGTGTCTTTGCTGGCATGAAGGTTTGATTGATAATG
ACCTTATAAATTTATCAAAAATAAAAAATTTAATTCTTAGGATCCAGTTGACTCGTTACC
AGCAAAATTGCTGAAAGGCTGGATGAAAGCTCGCGAGAATGCTTTAGATTTGGAAAGTGA
GTGTGTCATTGGAACAATAGTGCCACTAAAAGTTGATGTTACAAAGGAAGATGTTATAAG
AGAAGCTGCTGAGAAAATGGGCGCTCATCTTAATGCAAGCGAGCGAGGAATACTTGCAGT
AGTCAACACTGCTGGAAGTATTTTCCGTGGTCGCATGGACTCACAGGAGCTACACGAATG
GGAATGCATGTTCAAACACAACGTTTTGGGTTGTCTAAGAGTTGCACGTGGATTCATTGG
TTTATTGCGACCAACAAGAGGTCGATTCATCTTCCTGGGATCAGGCAGTACCGGCGACGG
GTTATTAGCTTATACAGCATCAAAGAATGCTGTTGAGGGTACAGCTTGTGCGTTACGCGA
TGAATTAAAACCCTATGGCGTTTCAGTTGTTACCTTGGATACCACAGGTGTTGCTGCAGA
AACTTTATATAAATCTCCAATTCCATTCACAATCTCTGATATTGAAGGCATTCCTACTCA
ATATTCGGCTGAAGTCTTGACACACTCTTCACTACAAGTCATCGAAAGGGCATTATTTGA
TCCACGACCATATGATAGCTATTCACTCTCTGTGCCACAAAATAAATTTATATGTAATTT
ACCCTGTCGTTCTGAATTTGTTCGTTCTAGAAATCACTCTTTTATTCAAAAAGTCTAAGT
ACGATGACAATGCGTGAATGAAGTGAAGATATATTAACTTCTTCTTTTTTTTCATTCACC
ACTTTAAGTGCTTTCTTTTATATATATGTAATGTACATACAATTTATTATAATTTTTTGT
TCGCACTTGAAATTTTAATTTTAATATTTTAAAAGAGATGATTTTTCTTCCATTTGTCAT
AAGATGAGGAAATAATGATGATGTCAAATGGTAGAAATAAGAGAGTTTGCATAATGATTT
CTTTTGAAAATCAGTTACATTCTATGAAAATTTTTTTAATTTTCTTAACAAGACAATAAA
ATCTTTAAAAATAAAA

>g10043.t5 Gene=g10043 Length=231
MKARENALDLESECVIGTIVPLKVDVTKEDVIREAAEKMGAHLNASERGILAVVNTAGSI
FRGRMDSQELHEWECMFKHNVLGCLRVARGFIGLLRPTRGRFIFLGSGSTGDGLLAYTAS
KNAVEGTACALRDELKPYGVSVVTLDTTGVAAETLYKSPIPFTISDIEGIPTQYSAEVLT
HSSLQVIERALFDPRPYDSYSLSVPQNKFICNLPCRSEFVRSRNHSFIQKV

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g10043.t5 Gene3D G3DSA:3.40.50.720 - 2 210 0
2 g10043.t5 PANTHER PTHR43313:SF36 GH26015P 18 145 0
3 g10043.t5 PANTHER PTHR43313 SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C 18 145 0
1 g10043.t5 Pfam PF00106 short chain dehydrogenase 17 154 0
4 g10043.t5 SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains 16 155 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

## [1] "No matching GO terms"

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed