General information for g10054.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Transcription factor BTF3-like protein.
Parent gene
- The parent gene g10054 is located on chr_1: 7106652..7107369 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10054 | g10054.t1 | TSS | g10054.t1 | 7105774 | 7105774 |
| chr_1 | g10054 | g10054.t1 | isoform | g10054.t1 | 7105843 | 7107061 |
| chr_1 | g10054 | g10054.t1 | exon | g10054.t1.exon1 | 7105843 | 7105906 |
| chr_1 | g10054 | g10054.t1 | cds | g10054.t1.CDS1 | 7105843 | 7105906 |
| chr_1 | g10054 | g10054.t1 | exon | g10054.t1.exon2 | 7106065 | 7106288 |
| chr_1 | g10054 | g10054.t1 | cds | g10054.t1.CDS2 | 7106065 | 7106288 |
| chr_1 | g10054 | g10054.t1 | exon | g10054.t1.exon3 | 7106633 | 7107061 |
| chr_1 | g10054 | g10054.t1 | cds | g10054.t1.CDS3 | 7106633 | 7107061 |
| chr_1 | g10054 | g10054.t1 | TTS | g10054.t1 | 7107366 | 7107366 |
Sequences
>g10054.t1 Gene=g10054 Length=717
ATGAATCCTGAAAAGTTAAAAAAACTGCAGGCACAAGCTGCCCAAGTTCGAATTGGTGGA
AAAGGTACCCCCCGTCGTAAGAAGAAGATAGTGCATCAAACTGCAGCAACTGACGATAAG
AAATTACAATCAACATTGAAGAAATTATCTGTTAATAATATACCTGGTATCGAAGAGGTT
AATTTGATTAAAAATGACGGAACTGTCATTCATTTCAATAATCCAAAAACGCAGGCATCG
CTTGCTAGCAATGTTTTTGCGATCACTGGACATGGAGAACAAAAACAGATTGCTGAATTG
TTGCCAGGAATTCTCACACAATTGGGCACTGAAGGATTGTCACAATTGAAAAGATTAGCC
AATAATGTTGGAATTGGAAGCAAAATTTTAAGCTCAGTTGAAGAAGGCAAAGAGGAGGAA
GATATGGATATTCCCGATTTAGTTGAAAATTTCGAGAATGTCGCCAACTCAGAAGCAAAA
ACAACTGATGCATCACCGGCAAAGGAAGCCGAAAAGAAAATCGAAGAAGTTGCAGCGCAA
ATCGCTTCGAGTACGATTCAAGAAGCTGCCGAAAAGACTGCAGCAGCTGTACCACCAACT
ACTACTACTACTGAAAAGCCTGCTGAAGAAAAGAAAGAACCGAAAAAAGAAACGACACCA
AAAAAATCAAACGAAAAGGGTGGAAAAAAGCAGCAGTCAAAGGATAAAAAAGCTTAA
>g10054.t1 Gene=g10054 Length=238
MNPEKLKKLQAQAAQVRIGGKGTPRRKKKIVHQTAATDDKKLQSTLKKLSVNNIPGIEEV
NLIKNDGTVIHFNNPKTQASLASNVFAITGHGEQKQIAELLPGILTQLGTEGLSQLKRLA
NNVGIGSKILSSVEEGKEEEDMDIPDLVENFENVANSEAKTTDASPAKEAEKKIEEVAAQ
IASSTIQEAAEKTAAAVPPTTTTTEKPAEEKKEPKKETTPKKSNEKGGKKQQSKDKKA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g10054.t1 | Coils | Coil | Coil | 167 | 187 | - |
| 8 | g10054.t1 | Gene3D | G3DSA:2.20.70.30 | - | 51 | 108 | 4.8E-31 |
| 7 | g10054.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 36 | - |
| 4 | g10054.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 156 | 238 | - |
| 6 | g10054.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 180 | 204 | - |
| 5 | g10054.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 205 | 238 | - |
| 2 | g10054.t1 | PANTHER | PTHR10351 | TRANSCRIPTION FACTOR BTF3 FAMILY MEMBER | 1 | 210 | 4.3E-65 |
| 1 | g10054.t1 | Pfam | PF01849 | NAC domain | 39 | 95 | 8.1E-22 |
| 10 | g10054.t1 | ProSiteProfiles | PS51151 | NAC A/B domain profile. | 36 | 101 | 17.213 |
| 3 | g10054.t1 | SMART | SM01407 | NAC_2 | 39 | 95 | 1.6E-23 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K01527 (nascent polypeptide-associated complex subunit beta)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
