General information for g10054.t13
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g10054 is located on chr_1: 7106652..7107369 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10054 | g10054.t13 | TSS | g10054.t13 | 7105774 | 7105774 |
| chr_1 | g10054 | g10054.t13 | isoform | g10054.t13 | 7105843 | 7107369 |
| chr_1 | g10054 | g10054.t13 | exon | g10054.t13.exon1 | 7105843 | 7105906 |
| chr_1 | g10054 | g10054.t13 | exon | g10054.t13.exon2 | 7106065 | 7106288 |
| chr_1 | g10054 | g10054.t13 | cds | g10054.t13.CDS1 | 7106194 | 7106288 |
| chr_1 | g10054 | g10054.t13 | exon | g10054.t13.exon3 | 7106644 | 7107369 |
| chr_1 | g10054 | g10054.t13 | cds | g10054.t13.CDS2 | 7106644 | 7107061 |
| chr_1 | g10054 | g10054.t13 | TTS | g10054.t13 | 7107366 | 7107366 |
Sequences
>g10054.t13 Gene=g10054 Length=1014
ATGAATCCTGAAAAGTTAAAAAAACTGCAGGCACAAGCTGCCCAAGTTCGAATTGGTGGA
AAAGGTACCCCCCGTCGTAAGAAGAAGATAGTGCATCAAACTGCAGCAACTGACGATAAG
AAATTACAATCAACATTGAAGAAATTATCTGTTAATAATATACCTGGTATCGAAGAGGTT
AATTTGATTAAAAATGACGGAACTGTCATTCATTTCAATAATCCAAAAACGCAGGCATCG
CTTGCTAGCAATGTTTTTGCGATCACTGGACATGGAGAACAAAAACAGGTTGCCAGGAAT
TCTCACACAATTGGGCACTGAAGGATTGTCACAATTGAAAAGATTAGCCAATAATGTTGG
AATTGGAAGCAAAATTTTAAGCTCAGTTGAAGAAGGCAAAGAGGAGGAAGATATGGATAT
TCCCGATTTAGTTGAAAATTTCGAGAATGTCGCCAACTCAGAAGCAAAAACAACTGATGC
ATCACCGGCAAAGGAAGCCGAAAAGAAAATCGAAGAAGTTGCAGCGCAAATCGCTTCGAG
TACGATTCAAGAAGCTGCCGAAAAGACTGCAGCAGCTGTACCACCAACTACTACTACTAC
TGAAAAGCCTGCTGAAGAAAAGAAAGAACCGAAAAAAGAAACGACACCAAAAAAATCAAA
CGAAAAGGGTGGAAAAAAGCAGCAGTCAAAGGATAAAAAAGCTTAAATTAACTTCATCGA
GGTCGTCGTTTGCTAATTTAAAACTATCTTCTACTTCATTAAAAAAAGAACAACTTTTTC
TTGTCAAAAGTTTTTCGTACATACTACTACTACTCTAACGCAGAGACATAGTTTGTTGCT
TTATTAAGAAAAAAACTAACAAAGAGAGAGAGAAAATAAAAATTCATCGGAAATCAAATT
TACATTATTTTGAGGGTATGAATGATTGCAACTTTTTTCAAATACTGTATTGATTGTAAC
AAAAAAAAATAAATAAGTCAGAACAAGTCCAAAAATATGGATGAAAACAATAAA
>g10054.t13 Gene=g10054 Length=170
MTELSFISIIQKRRHRLLAMFLRSLDMENKNRLPGILTQLGTEGLSQLKRLANNVGIGSK
ILSSVEEGKEEEDMDIPDLVENFENVANSEAKTTDASPAKEAEKKIEEVAAQIASSTIQE
AAEKTAAAVPPTTTTTEKPAEEKKEPKKETTPKKSNEKGGKKQQSKDKKA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g10054.t13 | Coils | Coil | Coil | 99 | 119 | - |
| 3 | g10054.t13 | MobiDBLite | mobidb-lite | consensus disorder prediction | 86 | 105 | - |
| 1 | g10054.t13 | MobiDBLite | mobidb-lite | consensus disorder prediction | 117 | 136 | - |
| 4 | g10054.t13 | MobiDBLite | mobidb-lite | consensus disorder prediction | 117 | 170 | - |
| 2 | g10054.t13 | MobiDBLite | mobidb-lite | consensus disorder prediction | 137 | 170 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
