Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Transcription factor BTF3-like protein.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10054 g10054.t15 TSS g10054.t15 7105774 7105774
chr_1 g10054 g10054.t15 isoform g10054.t15 7105843 7107369
chr_1 g10054 g10054.t15 exon g10054.t15.exon1 7105843 7105906
chr_1 g10054 g10054.t15 cds g10054.t15.CDS1 7105843 7105906
chr_1 g10054 g10054.t15 exon g10054.t15.exon2 7106065 7106288
chr_1 g10054 g10054.t15 cds g10054.t15.CDS2 7106065 7106288
chr_1 g10054 g10054.t15 exon g10054.t15.exon3 7106633 7106985
chr_1 g10054 g10054.t15 cds g10054.t15.CDS3 7106633 7106985
chr_1 g10054 g10054.t15 exon g10054.t15.exon4 7107220 7107369
chr_1 g10054 g10054.t15 cds g10054.t15.CDS4 7107220 7107268
chr_1 g10054 g10054.t15 TTS g10054.t15 7107366 7107366

Sequences

>g10054.t15 Gene=g10054 Length=791
ATGAATCCTGAAAAGTTAAAAAAACTGCAGGCACAAGCTGCCCAAGTTCGAATTGGTGGA
AAAGGTACCCCCCGTCGTAAGAAGAAGATAGTGCATCAAACTGCAGCAACTGACGATAAG
AAATTACAATCAACATTGAAGAAATTATCTGTTAATAATATACCTGGTATCGAAGAGGTT
AATTTGATTAAAAATGACGGAACTGTCATTCATTTCAATAATCCAAAAACGCAGGCATCG
CTTGCTAGCAATGTTTTTGCGATCACTGGACATGGAGAACAAAAACAGATTGCTGAATTG
TTGCCAGGAATTCTCACACAATTGGGCACTGAAGGATTGTCACAATTGAAAAGATTAGCC
AATAATGTTGGAATTGGAAGCAAAATTTTAAGCTCAGTTGAAGAAGGCAAAGAGGAGGAA
GATATGGATATTCCCGATTTAGTTGAAAATTTCGAGAATGTCGCCAACTCAGAAGCAAAA
ACAACTGATGCATCACCGGCAAAGGAAGCCGAAAAGAAAATCGAAGAAGTTGCAGCGCAA
ATCGCTTCGAGTACGATTCAAGAAGCTGCCGAAAAGACTGCAGCAGCTGTACCACCAACT
ACTACTACTACTGAAAAGCCTGCTGAAGAAAAGAAAGAACCAGAGAGAGAAAATAAAAAT
TCATCGGAAATCAAATTTACATTATTTTGAGGGTATGAATGATTGCAACTTTTTTCAAAT
ACTGTATTGATTGTAACAAAAAAAAATAAATAAGTCAGAACAAGTCCAAAAATATGGATG
AAAACAATAAA

>g10054.t15 Gene=g10054 Length=229
MNPEKLKKLQAQAAQVRIGGKGTPRRKKKIVHQTAATDDKKLQSTLKKLSVNNIPGIEEV
NLIKNDGTVIHFNNPKTQASLASNVFAITGHGEQKQIAELLPGILTQLGTEGLSQLKRLA
NNVGIGSKILSSVEEGKEEEDMDIPDLVENFENVANSEAKTTDASPAKEAEKKIEEVAAQ
IASSTIQEAAEKTAAAVPPTTTTTEKPAEEKKEPERENKNSSEIKFTLF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g10054.t15 Coils Coil Coil 167 187 -
8 g10054.t15 Gene3D G3DSA:2.20.70.30 - 51 108 4.4E-31
7 g10054.t15 MobiDBLite mobidb-lite consensus disorder prediction 15 36 -
5 g10054.t15 MobiDBLite mobidb-lite consensus disorder prediction 186 204 -
6 g10054.t15 MobiDBLite mobidb-lite consensus disorder prediction 186 229 -
4 g10054.t15 MobiDBLite mobidb-lite consensus disorder prediction 205 222 -
2 g10054.t15 PANTHER PTHR10351 TRANSCRIPTION FACTOR BTF3 FAMILY MEMBER 1 210 1.6E-66
1 g10054.t15 Pfam PF01849 NAC domain 39 95 7.6E-22
10 g10054.t15 ProSiteProfiles PS51151 NAC A/B domain profile. 36 101 17.213
3 g10054.t15 SMART SM01407 NAC_2 39 95 1.6E-23

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed