General information for g10054.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Transcription factor BTF3-like protein.
Parent gene
- The parent gene g10054 is located on chr_1: 7106652..7107369 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10054 | g10054.t4 | TSS | g10054.t4 | 7105774 | 7105774 |
| chr_1 | g10054 | g10054.t4 | isoform | g10054.t4 | 7105843 | 7107061 |
| chr_1 | g10054 | g10054.t4 | exon | g10054.t4.exon1 | 7105843 | 7105897 |
| chr_1 | g10054 | g10054.t4 | cds | g10054.t4.CDS1 | 7105843 | 7105897 |
| chr_1 | g10054 | g10054.t4 | exon | g10054.t4.exon2 | 7106092 | 7106288 |
| chr_1 | g10054 | g10054.t4 | cds | g10054.t4.CDS2 | 7106092 | 7106288 |
| chr_1 | g10054 | g10054.t4 | exon | g10054.t4.exon3 | 7106633 | 7107061 |
| chr_1 | g10054 | g10054.t4 | cds | g10054.t4.CDS3 | 7106633 | 7107061 |
| chr_1 | g10054 | g10054.t4 | TTS | g10054.t4 | 7107366 | 7107366 |
Sequences
>g10054.t4 Gene=g10054 Length=681
ATGAATCCTGAAAAGTTAAAAAAACTGCAGGCACAAGCTGCCCAAGTTCGAATTGTGCAT
CAAACTGCAGCAACTGACGATAAGAAATTACAATCAACATTGAAGAAATTATCTGTTAAT
AATATACCTGGTATCGAAGAGGTTAATTTGATTAAAAATGACGGAACTGTCATTCATTTC
AATAATCCAAAAACGCAGGCATCGCTTGCTAGCAATGTTTTTGCGATCACTGGACATGGA
GAACAAAAACAGATTGCTGAATTGTTGCCAGGAATTCTCACACAATTGGGCACTGAAGGA
TTGTCACAATTGAAAAGATTAGCCAATAATGTTGGAATTGGAAGCAAAATTTTAAGCTCA
GTTGAAGAAGGCAAAGAGGAGGAAGATATGGATATTCCCGATTTAGTTGAAAATTTCGAG
AATGTCGCCAACTCAGAAGCAAAAACAACTGATGCATCACCGGCAAAGGAAGCCGAAAAG
AAAATCGAAGAAGTTGCAGCGCAAATCGCTTCGAGTACGATTCAAGAAGCTGCCGAAAAG
ACTGCAGCAGCTGTACCACCAACTACTACTACTACTGAAAAGCCTGCTGAAGAAAAGAAA
GAACCGAAAAAAGAAACGACACCAAAAAAATCAAACGAAAAGGGTGGAAAAAAGCAGCAG
TCAAAGGATAAAAAAGCTTAA
>g10054.t4 Gene=g10054 Length=226
MNPEKLKKLQAQAAQVRIVHQTAATDDKKLQSTLKKLSVNNIPGIEEVNLIKNDGTVIHF
NNPKTQASLASNVFAITGHGEQKQIAELLPGILTQLGTEGLSQLKRLANNVGIGSKILSS
VEEGKEEEDMDIPDLVENFENVANSEAKTTDASPAKEAEKKIEEVAAQIASSTIQEAAEK
TAAAVPPTTTTTEKPAEEKKEPKKETTPKKSNEKGGKKQQSKDKKA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g10054.t4 | Coils | Coil | Coil | 155 | 175 | - |
| 8 | g10054.t4 | Gene3D | G3DSA:2.20.70.30 | - | 39 | 96 | 4.3E-31 |
| 5 | g10054.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 144 | 226 | - |
| 6 | g10054.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 168 | 192 | - |
| 7 | g10054.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 193 | 226 | - |
| 2 | g10054.t4 | PANTHER | PTHR10351:SF29 | TRANSCRIPTION FACTOR BTF3 HOMOLOG 4 | 1 | 147 | 1.6E-50 |
| 3 | g10054.t4 | PANTHER | PTHR10351 | TRANSCRIPTION FACTOR BTF3 FAMILY MEMBER | 1 | 147 | 1.6E-50 |
| 1 | g10054.t4 | Pfam | PF01849 | NAC domain | 27 | 83 | 7.4E-22 |
| 10 | g10054.t4 | ProSiteProfiles | PS51151 | NAC A/B domain profile. | 24 | 89 | 17.213 |
| 4 | g10054.t4 | SMART | SM01407 | NAC_2 | 27 | 83 | 1.6E-23 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
