General information for g10054.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Transcription factor BTF3 homolog 4.
Parent gene
- The parent gene g10054 is located on chr_1: 7106652..7107369 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10054 | g10054.t6 | TSS | g10054.t6 | 7105774 | 7105774 |
| chr_1 | g10054 | g10054.t6 | isoform | g10054.t6 | 7105843 | 7107061 |
| chr_1 | g10054 | g10054.t6 | exon | g10054.t6.exon1 | 7105843 | 7105906 |
| chr_1 | g10054 | g10054.t6 | cds | g10054.t6.CDS1 | 7105843 | 7105906 |
| chr_1 | g10054 | g10054.t6 | exon | g10054.t6.exon2 | 7106065 | 7106288 |
| chr_1 | g10054 | g10054.t6 | cds | g10054.t6.CDS2 | 7106065 | 7106288 |
| chr_1 | g10054 | g10054.t6 | exon | g10054.t6.exon3 | 7106652 | 7107061 |
| chr_1 | g10054 | g10054.t6 | cds | g10054.t6.CDS3 | 7106652 | 7106693 |
| chr_1 | g10054 | g10054.t6 | TTS | g10054.t6 | 7107366 | 7107366 |
Sequences
>g10054.t6 Gene=g10054 Length=698
ATGAATCCTGAAAAGTTAAAAAAACTGCAGGCACAAGCTGCCCAAGTTCGAATTGGTGGA
AAAGGTACCCCCCGTCGTAAGAAGAAGATAGTGCATCAAACTGCAGCAACTGACGATAAG
AAATTACAATCAACATTGAAGAAATTATCTGTTAATAATATACCTGGTATCGAAGAGGTT
AATTTGATTAAAAATGACGGAACTGTCATTCATTTCAATAATCCAAAAACGCAGGCATCG
CTTGCTAGCAATGTTTTTGCGATCACTGGACATGGAGAACAAAAACAGGAATTCTCACAC
AATTGGGCACTGAAGGATTGTCACAATTGAAAAGATTAGCCAATAATGTTGGAATTGGAA
GCAAAATTTTAAGCTCAGTTGAAGAAGGCAAAGAGGAGGAAGATATGGATATTCCCGATT
TAGTTGAAAATTTCGAGAATGTCGCCAACTCAGAAGCAAAAACAACTGATGCATCACCGG
CAAAGGAAGCCGAAAAGAAAATCGAAGAAGTTGCAGCGCAAATCGCTTCGAGTACGATTC
AAGAAGCTGCCGAAAAGACTGCAGCAGCTGTACCACCAACTACTACTACTACTGAAAAGC
CTGCTGAAGAAAAGAAAGAACCGAAAAAAGAAACGACACCAAAAAAATCAAACGAAAAGG
GTGGAAAAAAGCAGCAGTCAAAGGATAAAAAAGCTTAA
>g10054.t6 Gene=g10054 Length=109
MNPEKLKKLQAQAAQVRIGGKGTPRRKKKIVHQTAATDDKKLQSTLKKLSVNNIPGIEEV
NLIKNDGTVIHFNNPKTQASLASNVFAITGHGEQKQEFSHNWALKDCHN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g10054.t6 | Gene3D | G3DSA:2.20.70.30 | - | 51 | 99 | 2.5E-24 |
| 4 | g10054.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 36 | - |
| 2 | g10054.t6 | PANTHER | PTHR10351 | TRANSCRIPTION FACTOR BTF3 FAMILY MEMBER | 1 | 96 | 9.3E-48 |
| 1 | g10054.t6 | Pfam | PF01849 | NAC domain | 39 | 95 | 1.5E-22 |
| 6 | g10054.t6 | ProSiteProfiles | PS51151 | NAC A/B domain profile. | 36 | 101 | 15.864 |
| 3 | g10054.t6 | SMART | SM01407 | NAC_2 | 39 | 95 | 1.6E-23 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
