Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Transcription factor BTF3-like protein.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10054 g10054.t9 TSS g10054.t9 7105774 7105774
chr_1 g10054 g10054.t9 isoform g10054.t9 7105843 7107369
chr_1 g10054 g10054.t9 exon g10054.t9.exon1 7105843 7105906
chr_1 g10054 g10054.t9 cds g10054.t9.CDS1 7105843 7105906
chr_1 g10054 g10054.t9 exon g10054.t9.exon2 7106065 7106288
chr_1 g10054 g10054.t9 cds g10054.t9.CDS2 7106065 7106288
chr_1 g10054 g10054.t9 exon g10054.t9.exon3 7106633 7106944
chr_1 g10054 g10054.t9 cds g10054.t9.CDS3 7106633 7106944
chr_1 g10054 g10054.t9 exon g10054.t9.exon4 7107038 7107369
chr_1 g10054 g10054.t9 cds g10054.t9.CDS4 7107038 7107061
chr_1 g10054 g10054.t9 TTS g10054.t9 7107366 7107366

Sequences

>g10054.t9 Gene=g10054 Length=932
ATGAATCCTGAAAAGTTAAAAAAACTGCAGGCACAAGCTGCCCAAGTTCGAATTGGTGGA
AAAGGTACCCCCCGTCGTAAGAAGAAGATAGTGCATCAAACTGCAGCAACTGACGATAAG
AAATTACAATCAACATTGAAGAAATTATCTGTTAATAATATACCTGGTATCGAAGAGGTT
AATTTGATTAAAAATGACGGAACTGTCATTCATTTCAATAATCCAAAAACGCAGGCATCG
CTTGCTAGCAATGTTTTTGCGATCACTGGACATGGAGAACAAAAACAGATTGCTGAATTG
TTGCCAGGAATTCTCACACAATTGGGCACTGAAGGATTGTCACAATTGAAAAGATTAGCC
AATAATGTTGGAATTGGAAGCAAAATTTTAAGCTCAGTTGAAGAAGGCAAAGAGGAGGAA
GATATGGATATTCCCGATTTAGTTGAAAATTTCGAGAATGTCGCCAACTCAGAAGCAAAA
ACAACTGATGCATCACCGGCAAAGGAAGCCGAAAAGAAAATCGAAGAAGTTGCAGCGCAA
ATCGCTTCGAGTACGATTCAAGAAGCTGCCGAAAAGACTGCAGCAGCTGTACCACCAACT
CAGTCAAAGGATAAAAAAGCTTAAATTAACTTCATCGAGGTCGTCGTTTGCTAATTTAAA
ACTATCTTCTACTTCATTAAAAAAAGAACAACTTTTTCTTGTCAAAAGTTTTTCGTACAT
ACTACTACTACTCTAACGCAGAGACATAGTTTGTTGCTTTATTAAGAAAAAAACTAACAA
AGAGAGAGAGAAAATAAAAATTCATCGGAAATCAAATTTACATTATTTTGAGGGTATGAA
TGATTGCAACTTTTTTCAAATACTGTATTGATTGTAACAAAAAAAAATAAATAAGTCAGA
ACAAGTCCAAAAATATGGATGAAAACAATAAA

>g10054.t9 Gene=g10054 Length=207
MNPEKLKKLQAQAAQVRIGGKGTPRRKKKIVHQTAATDDKKLQSTLKKLSVNNIPGIEEV
NLIKNDGTVIHFNNPKTQASLASNVFAITGHGEQKQIAELLPGILTQLGTEGLSQLKRLA
NNVGIGSKILSSVEEGKEEEDMDIPDLVENFENVANSEAKTTDASPAKEAEKKIEEVAAQ
IASSTIQEAAEKTAAAVPPTQSKDKKA

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g10054.t9 Coils Coil Coil 167 187 -
6 g10054.t9 Gene3D G3DSA:2.20.70.30 - 51 108 3.7E-31
5 g10054.t9 MobiDBLite mobidb-lite consensus disorder prediction 15 36 -
4 g10054.t9 MobiDBLite mobidb-lite consensus disorder prediction 188 207 -
2 g10054.t9 PANTHER PTHR10351 TRANSCRIPTION FACTOR BTF3 FAMILY MEMBER 1 196 7.0E-66
1 g10054.t9 Pfam PF01849 NAC domain 39 95 6.3E-22
8 g10054.t9 ProSiteProfiles PS51151 NAC A/B domain profile. 36 101 17.213
3 g10054.t9 SMART SM01407 NAC_2 39 95 1.6E-23

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed