General information for g10070.t11
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g10070 is located on chr_1: 7246699..7247303 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10070 | g10070.t11 | TTS | g10070.t11 | 7246573 | 7246573 |
| chr_1 | g10070 | g10070.t11 | isoform | g10070.t11 | 7246699 | 7247303 |
| chr_1 | g10070 | g10070.t11 | exon | g10070.t11.exon1 | 7246699 | 7246874 |
| chr_1 | g10070 | g10070.t11 | cds | g10070.t11.CDS1 | 7246872 | 7246874 |
| chr_1 | g10070 | g10070.t11 | exon | g10070.t11.exon2 | 7246950 | 7247303 |
| chr_1 | g10070 | g10070.t11 | cds | g10070.t11.CDS2 | 7246950 | 7247303 |
| chr_1 | g10070 | g10070.t11 | TSS | g10070.t11 | 7247394 | 7247394 |
Sequences
>g10070.t11 Gene=g10070 Length=530
ATGTCAGTTCGCCACGATTGGTATCAAAACGACGAGAAAGTCGTAATTACAGTACTTCTT
AAAAACGCTGTTGAGAAAAATTATAAATGTGAAATAAATGAAAATTCACTTCAAATTACT
GCCGAAAACTATGAACTCAATTTGGATCTTCACGCAAGTATAATTCCTGAAAAGTCATCA
CACAAAGCAACACCTCATAAAATTGAAATAAATTTGATAAAAAAAAATTTTGGAAAATGG
GCTGCATTAGAGAAAAAAGTACAAGAAGTTGCCGTTAAAGTTTATAGTGGAAAAAAACCA
GACGAATGGGATAAACTAGCCAAAGATATTGAAAAGAGTGATGATAAAGAAGAATGAATG
CATTATTCAAGAAAATTTACGAGAGTGGAACAGAAGAACAACGTCGAGCAATGAACAAAT
CATTTCAAGAATCGGGTGGCACTGTTTTAAGCACTAACTGGGATGAAGTTAAAAAAGATA
AAGTTGATGTTAAACCTCCTGACGGATGTGAATTTCGGAAATGGGAATAA
>g10070.t11 Gene=g10070 Length=118
MSVRHDWYQNDEKVVITVLLKNAVEKNYKCEINENSLQITAENYELNLDLHASIIPEKSS
HKATPHKIEINLIKKNFGKWAALEKKVQEVAVKVYSGKKPDEWDKLAKDIEKSDDKEE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g10070.t11 | CDD | cd06466 | p23_CS_SGT1_like | 6 | 84 | 0.000 |
| 5 | g10070.t11 | Gene3D | G3DSA:2.60.40.790 | - | 1 | 97 | 0.000 |
| 2 | g10070.t11 | PANTHER | PTHR45862:SF1 | PROTEIN SGT1 HOMOLOG | 2 | 116 | 0.000 |
| 3 | g10070.t11 | PANTHER | PTHR45862 | PROTEIN SGT1 HOMOLOG | 2 | 116 | 0.000 |
| 1 | g10070.t11 | Pfam | PF04969 | CS domain | 3 | 74 | 0.000 |
| 6 | g10070.t11 | ProSiteProfiles | PS51203 | CS domain profile. | 1 | 84 | 16.477 |
| 4 | g10070.t11 | SUPERFAMILY | SSF49764 | HSP20-like chaperones | 2 | 86 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed