General information for g10075.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative fatty acyl-CoA reductase CG5065.
Parent gene
- The parent gene g10075 is located on chr_1: 7265181..7267604 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10075 | g10075.t1 | TTS | g10075.t1 | 7265000 | 7265000 |
| chr_1 | g10075 | g10075.t1 | isoform | g10075.t1 | 7265181 | 7267604 |
| chr_1 | g10075 | g10075.t1 | exon | g10075.t1.exon1 | 7265181 | 7265421 |
| chr_1 | g10075 | g10075.t1 | cds | g10075.t1.CDS1 | 7265181 | 7265421 |
| chr_1 | g10075 | g10075.t1 | exon | g10075.t1.exon2 | 7265477 | 7265765 |
| chr_1 | g10075 | g10075.t1 | cds | g10075.t1.CDS2 | 7265477 | 7265765 |
| chr_1 | g10075 | g10075.t1 | exon | g10075.t1.exon3 | 7265835 | 7266044 |
| chr_1 | g10075 | g10075.t1 | cds | g10075.t1.CDS3 | 7265835 | 7266044 |
| chr_1 | g10075 | g10075.t1 | exon | g10075.t1.exon4 | 7266111 | 7266135 |
| chr_1 | g10075 | g10075.t1 | cds | g10075.t1.CDS4 | 7266111 | 7266135 |
| chr_1 | g10075 | g10075.t1 | exon | g10075.t1.exon5 | 7266873 | 7267604 |
| chr_1 | g10075 | g10075.t1 | cds | g10075.t1.CDS5 | 7266873 | 7267604 |
| chr_1 | g10075 | g10075.t1 | TSS | g10075.t1 | 7267633 | 7267633 |
Sequences
>g10075.t1 Gene=g10075 Length=1497
ATGCGTGAAATATTCGTGGAAAAGTCATACGAAAACCAATCAGTCTTAGTTACTGGTGGC
AGTGGTTTTATTGGCAAAGTTCTGATAGAAAAATTACTACGACAATGTAAAAATATCAAG
CATGTCTTTATTTTATTGCGATCAAAAAATGGTGAAGGAATAGAAAAGCGTTTTGAGAAT
TTTAAAAATTTGATCGTTTTTAACAAGTTAAGAAAAAGCAATCCGAAAGTGTTTGAAAAG
TTGAGAGCAATTGAAGGAGATTTGATGGAAGAAAATGCAGGTTTATCAAAAAGTGATGAA
GAATATTTAAAGAAAAATCTCAATTTTATTATTCATTGTGCTGCCAGCGTAAGATTTGAT
GAACCACTTAAAAAAGCTCTTAAAATTAACACACTCAGTACACGAGATTTATTAAATTTG
GCAGAAAAATGTGAAAATTTAAAAGCCTTTGTGCATGTGTCAACCGCATTTTCAAATACA
AATCAATCAGTGATATACGAGAAAATTTATGAGCCCATTTGTGATTATAAGCATGTTGTT
AAGCTTGCTGAAAATAATGAAGATGAAGAATTGAATAAAATTCTTCAAAATGCATTACAA
GTCTTTCCCAATACATACATTTTCACTAAAAACCTCACGGAAAAGCTTGTATCAGATTAT
ACTCATCTTCCAATCTCAATTGTTCGACCTTCTATCGTTTGTCCGTCTCATATTGAGCCC
GAACTAGGATGGATTGACAGCATGAATGGTCCGATGGGTGTACTTATGGGAGCAAGCTCT
GGTATACTGCGTACAGTTCATGGAAACGGAGAATTATTATGTGATCTCATTCCATGCGAT
TATGTCACTAATTGCATTGTTGCTGCTGGTGCTTCAATCTCAACTAGTCCTTCGAAGGCC
CTTGAAATCTATAATTGCACATCGAGCCAGCAAATGCCAATGACATGGAATGAATTTTTA
GATCTTGGCCAGAAAACTTACTCAAAATATCCATCGACGAAAGTTCTCTGGTATCCAGGA
GGAAGAATGTGTTCAAACTATTATGGATATTTGCTTTACTTTTTATTCTTTCAATTTTTA
CCCGCAATTCTGATTGACGTTTGTTCAGTATTAGCTGGCAAAAAAAGATGGGCTATCAAA
TTACAAAGAAAGATTTTTGACTCATTAAAAGTATTTGAATATTTTCTAATCAACTCATGG
CAATGGGATAGCAAAAATTTCCAATTATTATCACAAAGAATTAATGTTGAAGAAAGACGA
AACTTTAACTTTGATGTTTCTTCATTGGATTTAAAGCAGTATATTGAACATTGGGTTATT
GGTTCAAGACGATTTATAATGAAATTAGATGATGCCACCATCCCTGAAGCTAAACGCAAA
TTCATATTTCTGTATTGGCTTGATGTCATTGTAAAATCATTATTTATTGGTGGTTTTGTT
TACTTTTTGATACGAATGTATACTAAGATTGCAATGAATGTTATTGCTGCTAATTGA
>g10075.t1 Gene=g10075 Length=498
MREIFVEKSYENQSVLVTGGSGFIGKVLIEKLLRQCKNIKHVFILLRSKNGEGIEKRFEN
FKNLIVFNKLRKSNPKVFEKLRAIEGDLMEENAGLSKSDEEYLKKNLNFIIHCAASVRFD
EPLKKALKINTLSTRDLLNLAEKCENLKAFVHVSTAFSNTNQSVIYEKIYEPICDYKHVV
KLAENNEDEELNKILQNALQVFPNTYIFTKNLTEKLVSDYTHLPISIVRPSIVCPSHIEP
ELGWIDSMNGPMGVLMGASSGILRTVHGNGELLCDLIPCDYVTNCIVAAGASISTSPSKA
LEIYNCTSSQQMPMTWNEFLDLGQKTYSKYPSTKVLWYPGGRMCSNYYGYLLYFLFFQFL
PAILIDVCSVLAGKKRWAIKLQRKIFDSLKVFEYFLINSWQWDSKNFQLLSQRINVEERR
NFNFDVSSLDLKQYIEHWVIGSRRFIMKLDDATIPEAKRKFIFLYWLDVIVKSLFIGGFV
YFLIRMYTKIAMNVIAAN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 14 | g10075.t1 | CDD | cd05236 | FAR-N_SDR_e | 14 | 331 | 5.00735E-121 |
| 15 | g10075.t1 | CDD | cd09071 | FAR_C | 361 | 447 | 2.91218E-25 |
| 8 | g10075.t1 | Gene3D | G3DSA:3.40.50.720 | - | 6 | 338 | 1.4E-75 |
| 3 | g10075.t1 | PANTHER | PTHR11011:SF60 | FATTY ACYL-COA REDUCTASE 2 | 6 | 484 | 2.0E-149 |
| 4 | g10075.t1 | PANTHER | PTHR11011 | MALE STERILITY PROTEIN 2-RELATED | 6 | 484 | 2.0E-149 |
| 1 | g10075.t1 | Pfam | PF07993 | Male sterility protein | 17 | 286 | 1.9E-71 |
| 2 | g10075.t1 | Pfam | PF03015 | Male sterility protein | 357 | 448 | 9.9E-24 |
| 11 | g10075.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 349 | - |
| 13 | g10075.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 350 | 373 | - |
| 9 | g10075.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 374 | 462 | - |
| 12 | g10075.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 463 | 484 | - |
| 10 | g10075.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 485 | 498 | - |
| 7 | g10075.t1 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 7 | 305 | 7.94E-34 |
| 6 | g10075.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 351 | 373 | - |
| 5 | g10075.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 462 | 484 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0080019 | fatty-acyl-CoA reductase (alcohol-forming) activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
