Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Fatty acyl-CoA reductase 2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10075 g10075.t2 TTS g10075.t2 7265000 7265000
chr_1 g10075 g10075.t2 isoform g10075.t2 7265181 7265765
chr_1 g10075 g10075.t2 exon g10075.t2.exon1 7265181 7265421
chr_1 g10075 g10075.t2 cds g10075.t2.CDS1 7265181 7265421
chr_1 g10075 g10075.t2 exon g10075.t2.exon2 7265477 7265765
chr_1 g10075 g10075.t2 cds g10075.t2.CDS2 7265477 7265706
chr_1 g10075 g10075.t2 TSS g10075.t2 NA NA

Sequences

>g10075.t2 Gene=g10075 Length=530
GCCAGAAAACTTACTCAAAATATCCATCGACGAAAGTTCTCTGGTATCCAGGAGGAAGAA
TGTGTTCAAACTATTATGGATATTTGCTTTACTTTTTATTCTTTCAATTTTTACCCGCAA
TTCTGATTGACGTTTGTTCAGTATTAGCTGGCAAAAAAAGATGGGCTATCAAATTACAAA
GAAAGATTTTTGACTCATTAAAAGTATTTGAATATTTTCTAATCAACTCATGGCAATGGG
ATAGCAAAAATTTCCAATTATTATCACAAAGAATTAATGTTGAAGAAAGACGAAACTTTA
ACTTTGATGTTTCTTCATTGGATTTAAAGCAGTATATTGAACATTGGGTTATTGGTTCAA
GACGATTTATAATGAAATTAGATGATGCCACCATCCCTGAAGCTAAACGCAAATTCATAT
TTCTGTATTGGCTTGATGTCATTGTAAAATCATTATTTATTGGTGGTTTTGTTTACTTTT
TGATACGAATGTATACTAAGATTGCAATGAATGTTATTGCTGCTAATTGA

>g10075.t2 Gene=g10075 Length=156
MCSNYYGYLLYFLFFQFLPAILIDVCSVLAGKKRWAIKLQRKIFDSLKVFEYFLINSWQW
DSKNFQLLSQRINVEERRNFNFDVSSLDLKQYIEHWVIGSRRFIMKLDDATIPEAKRKFI
FLYWLDVIVKSLFIGGFVYFLIRMYTKIAMNVIAAN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g10075.t2 CDD cd09071 FAR_C 19 105 1.47277E-24
2 g10075.t2 PANTHER PTHR11011:SF61 FATTY ACYL-COA REDUCTASE 3 146 1.3E-26
3 g10075.t2 PANTHER PTHR11011 MALE STERILITY PROTEIN 2-RELATED 3 146 1.3E-26
1 g10075.t2 Pfam PF03015 Male sterility protein 15 106 8.6E-25
8 g10075.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 5 -
10 g10075.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 6 31 -
6 g10075.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 32 120 -
9 g10075.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 121 142 -
7 g10075.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 143 156 -
5 g10075.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 10 32 -
4 g10075.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 120 142 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0080019 fatty-acyl-CoA reductase (alcohol-forming) activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values