Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10080 g10080.t3 isoform g10080.t3 7289627 7290386
chr_1 g10080 g10080.t3 exon g10080.t3.exon1 7289627 7290386
chr_1 g10080 g10080.t3 cds g10080.t3.CDS1 7289629 7290057
chr_1 g10080 g10080.t3 TSS g10080.t3 NA NA
chr_1 g10080 g10080.t3 TTS g10080.t3 NA NA

Sequences

>g10080.t3 Gene=g10080 Length=760
GGTAATTTATTTTACATTTATTTTTTGATGATCTTTTTCTAATGGTTCTTCAATTTAGAT
TCATCTTTAAAGAACTATAATTTTTACAAAGATTCAAATATTAGTGAAGCACTTACATGT
ATTGATGTAATGAAGAAACTTGAACAACGTGTAATCATTGAGCTAGAGCAATGGCCTGAT
CATGCTGTTCTAAATGACGTAAGTTATCTCAAAGAAAATTTCATTTATTGTTGAAATAAA
TAAATTTTATAAATTTACAGATCATTATTATTATTAATCGAATACGTGGATTTTCGAGTA
ATTCACCATTAGTTCGGTTTAATGTAGGCATGCAAATATTAAGAAAGAAAGTTGACGAAT
GGAATTCCGTTGCACATCGTTTAAATAATTTTAAAGATATTGAGACTGAAATAGCAGAAA
TCATACAAAAATGGATGCAAATGGAACTTCAATGTTGGAGAGAGTCATTGAATCAAACTT
TTGATAAAGCTTGTGGAAAAGCATATCGCTATTGGTTCTTCCTTTACAACTTGATTCATG
AATATTTAGTTGATTCAAATGTAGATACTGATGTTGATTCATCATTAACTGACTATAAAA
AAGTTGAAAAAAGATTTACTGATGATGAGATTGATGAAGAGAGTCCAGTAAAAGGAAAAA
TATCGATTGATGCTATGATAAAGGTTCTCAAACAGTTTATTGAATCCTCAAGTTATGCTG
AATTTCCGATACGAATGAACCTATTAAAATCCTTTGTGAT

>g10080.t3 Gene=g10080 Length=143
MQILRKKVDEWNSVAHRLNNFKDIETEIAEIIQKWMQMELQCWRESLNQTFDKACGKAYR
YWFFLYNLIHEYLVDSNVDTDVDSSLTDYKKVEKRFTDDEIDEESPVKGKISIDAMIKVL
KQFIESSSYAEFPIRMNLLKSFV

Protein features from InterProScan

No InterPro annotations for this transcript.

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed