Gene loci information

Transcript annotation

  • This transcript has been annotated as Midasin.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10080 g10080.t4 isoform g10080.t4 7297918 7299210
chr_1 g10080 g10080.t4 exon g10080.t4.exon1 7297918 7297949
chr_1 g10080 g10080.t4 cds g10080.t4.CDS1 7297918 7297949
chr_1 g10080 g10080.t4 exon g10080.t4.exon2 7298008 7299210
chr_1 g10080 g10080.t4 cds g10080.t4.CDS2 7298008 7299148
chr_1 g10080 g10080.t4 TSS g10080.t4 NA NA
chr_1 g10080 g10080.t4 TTS g10080.t4 NA NA

Sequences

>g10080.t4 Gene=g10080 Length=1235
GAAAAACAAGTTCAGTTCAATATTTAGCATATCAAACAAATCATAAATTGGTGGTTGTTA
ATATGAACAATCAATCAGACGTGTCTGACTTAATTGGAGGATTCAAACCTGTTGATATTA
GCTTTATAATATCGCCTTTACGAAATGAGTTTGAAATACTTTTTGCTAGAACATTCGATA
TAATCAAGAATGAAAAGTTTTTGAGTCATGTTTCTGGATGTTTTAATCGTGGAGATCATC
CTATTTTGGTGAAATTAATGTTAAAAGTAATTTCAAATGCTTGTCAAATTTCAAGCGAAA
AAAAGAATGAGAATGATTTAGCAAGATGGAAAATTTTAGAGAAAAAATTAAAAAGACTTG
ATCAACAATTAAAGACATCTACCAATCTTGCATTTGCTTTTATACCAGGTTCATTAGTAA
ATTGCATTCGAAATGGTGACTGGGTACTACTAGATGAAATTAATTTGGCATCAACAGAAA
CATTGGAATGTTTATCAACCATTCTTGAGCCTGATGGTTCTATTGTTCTTTTGGAGAAAG
GCGATTTCGTTCCCATTAAAAGACATCCAGATTTTCGAATTTTTGCATGTATGAATCCAA
GTACTGATGTTGGTAAAAAAGATCTTCCAGTTGGAATTCGAAATAGATTCAGCGAATTTT
TTGTCGATGAATTAACAAATGAAAGTGATTTGCAAACACTCATTGGTGATTATCTGAGCA
ATACAGGAATAAATAAATCAAGAATACGTGAAGCTGTTTTGCTTTATATGACTCTAAGAA
ACTTGTCACAATTAGAACTGAATGATGGATTAGGAAACAAACCAGTTTTTTCTCTAAGAA
CACTATGCAGAGCTCTCAAAACTTGTGCAAAAAATTTATGCGGTTCTATTGAAAGAAATA
TTTATGAAAGTTTTTGTCTTAGTTTTCTTACTCAACTTGATTCAGAGTCTCACATGAAGG
TTCTTAAAAAAATTCAACAACATCTGGTCAGTGATGTAAAGAGAGTTCTATCGCAATCAA
TTCCAAAGCCAAACGTTAATGTAACAAACTTTGAAGGATATTGGGTTGAAAATGGAGATA
AAGAACCGCAAGAATGCAAAGAATATATTTTGACTGAAAGTGTTCAGAAAAATCTAAAAG
ATTTAGCTCGTATCATTTCAATTGGAAAGCTGCCAATTTTACTACAAGGTCCTACTTCAG
CTGGCAAAACTAGTCTTATTGAATTTATTGCAAAA

>g10080.t4 Gene=g10080 Length=391
MNNQSDVSDLIGGFKPVDISFIISPLRNEFEILFARTFDIIKNEKFLSHVSGCFNRGDHP
ILVKLMLKVISNACQISSEKKNENDLARWKILEKKLKRLDQQLKTSTNLAFAFIPGSLVN
CIRNGDWVLLDEINLASTETLECLSTILEPDGSIVLLEKGDFVPIKRHPDFRIFACMNPS
TDVGKKDLPVGIRNRFSEFFVDELTNESDLQTLIGDYLSNTGINKSRIREAVLLYMTLRN
LSQLELNDGLGNKPVFSLRTLCRALKTCAKNLCGSIERNIYESFCLSFLTQLDSESHMKV
LKKIQQHLVSDVKRVLSQSIPKPNVNVTNFEGYWVENGDKEPQECKEYILTESVQKNLKD
LARIISIGKLPILLQGPTSAGKTSLIEFIAK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g10080.t4 Gene3D G3DSA:3.40.50.300 - 1 213 0.00e+00
3 g10080.t4 PANTHER PTHR48103 MIDASIN-RELATED 1 391 0.00e+00
2 g10080.t4 Pfam PF07728 AAA domain (dynein-related subfamily) 101 196 1.00e-07
1 g10080.t4 Pfam PF17865 Midasin AAA lid domain 209 309 0.00e+00
5 g10080.t4 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 111 272 0.00e+00
4 g10080.t4 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 341 391 4.92e-05

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0016887 ATP hydrolysis activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed