Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10080 g10080.t7 TTS g10080.t7 7299435 7299435
chr_1 g10080 g10080.t7 isoform g10080.t7 7300418 7301567
chr_1 g10080 g10080.t7 exon g10080.t7.exon1 7300418 7301567
chr_1 g10080 g10080.t7 cds g10080.t7.CDS1 7300418 7301161
chr_1 g10080 g10080.t7 TSS g10080.t7 7301666 7301666

Sequences

>g10080.t7 Gene=g10080 Length=1150
ATGAGCGTAAATATAGTAAATATTAAAAATTCCTTGCTGAAAGTGAATTCAGTATTCGAA
TCAAATGAAATTAGTCAAATTTTAACTAAAAAGGTAACTTGAAACAAATGTTCAGACACA
CGTGAGTTTTAAAAAGTTTCATTTTAGAAATTAATTGCTGAAGACATTGATAAAACTATA
GATGTGCTATGTAAATTAATAATTCAAAATCCTCACCATACGAGTTTAGTTCGTGACAAT
TTCAGCTTTTTACTTTTACCAATTGTCTATGTTCTTTTGGATTTTTCGGAAAAATGTTAT
GCAGACTTTCAAATAAAATGTTTCATTCTCTCAATTCTGACAGAAAACAATCTACAAATC
ATCAGGTGAGTTTATGCGTAATTTAATTTATATATTATGTTTAATTATGTTACATTATAG
ATATAGCTATCAATTCTTCATTGATAATAAAAATCGAACACCGTTTAATGATAATGAAGA
AAAAGGTAGTGGACATAAGAAGAAGAAAATGAAACTTACAAGCAATTTATCGGATCTAGA
TATTGTTCAAATGTCTTTGCGATATCTGAAACTGGATTTGTCTTTCTATCGTCGAATTTG
GGATTGGAATGATTTCATTGAGCGTTTTTGTAACAAAGGATGTGATTTGCAAAAATTCTA
TTGCAATCAAATAATGTCAATGATTTTTAATATGAGCACTTATCAAACAGCTATCCTAAA
TTCAGAAATTTCTGAAGAAATATTGGTAAATTCTTCTATTGAAATTTACAATGAAACGAA
TTGTAGCAATGATTTCAACGAAGAAAATGGAGATTTCATTGACTGGAAATTCGATAATGA
TAAATTAATAAATGTGGAAGGTATTTATTTGCCTATATATAACAAGTTGACTGCAGATTA
CTTTAATGACAAAACAGATATTGTTCGAGTGAGTTCAACAAAAATTAACTTGAGGAGTGT
AGCTCTCGGAATTTCATCAGGCAAAGCAATTTGTTTAAATGGTCAAGTTGGATGCGGAAA
ATCAATGTTGGTAGAATATATGGCAAAGAGAGTTGGACGTATTCCACCCAAAATTGAAGA
TTATCAAGATTATATTGAAACAAAGAAGAATATTGATGCAAGAGTTACAAATGGTAATAT
TAAAAGAAAA

>g10080.t7 Gene=g10080 Length=248
MLHYRYSYQFFIDNKNRTPFNDNEEKGSGHKKKKMKLTSNLSDLDIVQMSLRYLKLDLSF
YRRIWDWNDFIERFCNKGCDLQKFYCNQIMSMIFNMSTYQTAILNSEISEEILVNSSIEI
YNETNCSNDFNEENGDFIDWKFDNDKLINVEGIYLPIYNKLTADYFNDKTDIVRVSSTKI
NLRSVALGISSGKAICLNGQVGCGKSMLVEYMAKRVGRIPPKIEDYQDYIETKKNIDARV
TNGNIKRK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
g10080.t7 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 171 219 1.07e-05

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed