General information for g10100.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Enoyl-CoA delta isomerase 2, mitochondrial.
Parent gene
- The parent gene g10100 is located on chr_1: 7357846..7358797 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10100 | g10100.t1 | TSS | g10100.t1 | 7357825 | 7357825 |
| chr_1 | g10100 | g10100.t1 | isoform | g10100.t1 | 7357833 | 7358726 |
| chr_1 | g10100 | g10100.t1 | exon | g10100.t1.exon1 | 7357833 | 7358011 |
| chr_1 | g10100 | g10100.t1 | cds | g10100.t1.CDS1 | 7357833 | 7358011 |
| chr_1 | g10100 | g10100.t1 | exon | g10100.t1.exon2 | 7358063 | 7358283 |
| chr_1 | g10100 | g10100.t1 | cds | g10100.t1.CDS2 | 7358063 | 7358283 |
| chr_1 | g10100 | g10100.t1 | exon | g10100.t1.exon3 | 7358377 | 7358726 |
| chr_1 | g10100 | g10100.t1 | cds | g10100.t1.CDS3 | 7358377 | 7358726 |
| chr_1 | g10100 | g10100.t1 | TTS | g10100.t1 | 7358803 | 7358803 |
Sequences
>g10100.t1 Gene=g10100 Length=750
ATGGAAATTTTTGAGGTAAAAGATGTTGGTGCAATACGCCAAGTAACAATAAATAATCCA
CGTAAAAAGAATGCTTTAAATCGCAAGGCTTATATTGCCATAGCAAAGCTCTTAAACGAT
GCTGGCAAAGACAATAAAGTCAAGTGTTTGATATTAACTGGAAAGGGAGATTTCTTCAGC
TCAGGAAATGACTTGACACAAGACTTTAGTGATTATCCAAATGATTCAATTAGAGAGCAA
CCAGTAACAATAATGATTGAAGCTTTTATAAAATTTTCTAAACTACTTGTTGCACTTGTA
AATGGACCAGCTATCGGAATTGGCACAACAATGCTTGGACTATGTGATATTGTTTATTGC
TCTGAAAATGCCTATTTTTATACACCTTTTACTGCCTTAGGCTTATGTGCTGAAGGGTGT
TCGTCACAAACATTTCCTATCATTATGGGCCAGAGCATAGCAAATGAAATGTTGTTTCTT
AATAAAAAGATGTCTGCGCAAGAGGCATATCGAGTTGGTTTCGTTGCTCAGATTTATAAA
CATGAATCAGAGATTTTTGAAAAGTTAAAAGGCATTGAAACACTTTCACTTAGTTCTATT
ATGGCAAACAAAAAGCTCATGAGAGGTCCTCTAATTGAGAATTTAATGAAAGTCAACTTG
GCGGAAGTGGGAGAAATTGGAAAATTATTTCAAAGTGATGAGGCAATAGAAGCAATGATT
AGGTTTGCATCAAGAAAGAGTAAATTATGA
>g10100.t1 Gene=g10100 Length=249
MEIFEVKDVGAIRQVTINNPRKKNALNRKAYIAIAKLLNDAGKDNKVKCLILTGKGDFFS
SGNDLTQDFSDYPNDSIREQPVTIMIEAFIKFSKLLVALVNGPAIGIGTTMLGLCDIVYC
SENAYFYTPFTALGLCAEGCSSQTFPIIMGQSIANEMLFLNKKMSAQEAYRVGFVAQIYK
HESEIFEKLKGIETLSLSSIMANKKLMRGPLIENLMKVNLAEVGEIGKLFQSDEAIEAMI
RFASRKSKL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g10100.t1 | CDD | cd06558 | crotonase-like | 10 | 182 | 0 |
| 4 | g10100.t1 | Gene3D | G3DSA:3.90.226.10 | - | 2 | 239 | 0 |
| 2 | g10100.t1 | PANTHER | PTHR43684 | - | 4 | 248 | 0 |
| 1 | g10100.t1 | Pfam | PF00378 | Enoyl-CoA hydratase/isomerase | 11 | 246 | 0 |
| 3 | g10100.t1 | SUPERFAMILY | SSF52096 | ClpP/crotonase | 4 | 239 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003824 | catalytic activity | MF |
KEGG
Orthology
- This transcript has been annotated with K13239 (Delta3-Delta2-enoyl-CoA isomerase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
