Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Enoyl-CoA delta isomerase 2, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10100 g10100.t2 TSS g10100.t2 7357825 7357825
chr_1 g10100 g10100.t2 isoform g10100.t2 7357833 7358726
chr_1 g10100 g10100.t2 exon g10100.t2.exon1 7357833 7358011
chr_1 g10100 g10100.t2 cds g10100.t2.CDS1 7357833 7358011
chr_1 g10100 g10100.t2 exon g10100.t2.exon2 7358063 7358226
chr_1 g10100 g10100.t2 cds g10100.t2.CDS2 7358063 7358226
chr_1 g10100 g10100.t2 exon g10100.t2.exon3 7358284 7358726
chr_1 g10100 g10100.t2 cds g10100.t2.CDS3 7358284 7358315
chr_1 g10100 g10100.t2 TTS g10100.t2 7358803 7358803

Sequences

>g10100.t2 Gene=g10100 Length=786
ATGGAAATTTTTGAGGTAAAAGATGTTGGTGCAATACGCCAAGTAACAATAAATAATCCA
CGTAAAAAGAATGCTTTAAATCGCAAGGCTTATATTGCCATAGCAAAGCTCTTAAACGAT
GCTGGCAAAGACAATAAAGTCAAGTGTTTGATATTAACTGGAAAGGGAGATTTCTTCAGC
TCAGGAAATGACTTGACACAAGACTTTAGTGATTATCCAAATGATTCAATTAGAGAGCAA
CCAGTAACAATAATGATTGAAGCTTTTATAAAATTTTCTAAACTACTTGTTGCACTTGTA
AATGGACCAGCTATCGGAATTGGCACAACAATGCTTGGACTATGTAAGATAAATGAGAGG
CTGCTCAGCAAATGAGTTACAAATAGCAACACTATGATGATAAATAAACACTCACTAAAT
TCATCTTATGTATTAGGCTTATGTGCTGAAGGGTGTTCGTCACAAACATTTCCTATCATT
ATGGGCCAGAGCATAGCAAATGAAATGTTGTTTCTTAATAAAAAGATGTCTGCGCAAGAG
GCATATCGAGTTGGTTTCGTTGCTCAGATTTATAAACATGAATCAGAGATTTTTGAAAAG
TTAAAAGGCATTGAAACACTTTCACTTAGTTCTATTATGGCAAACAAAAAGCTCATGAGA
GGTCCTCTAATTGAGAATTTAATGAAAGTCAACTTGGCGGAAGTGGGAGAAATTGGAAAA
TTATTTCAAAGTGATGAGGCAATAGAAGCAATGATTAGGTTTGCATCAAGAAAGAGTAAA
TTATGA

>g10100.t2 Gene=g10100 Length=124
MEIFEVKDVGAIRQVTINNPRKKNALNRKAYIAIAKLLNDAGKDNKVKCLILTGKGDFFS
SGNDLTQDFSDYPNDSIREQPVTIMIEAFIKFSKLLVALVNGPAIGIGTTMLGLCKINER
LLSK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g10100.t2 CDD cd06558 crotonase-like 10 117 0
4 g10100.t2 Gene3D G3DSA:3.90.226.10 - 2 118 0
2 g10100.t2 PANTHER PTHR43684 - 4 116 0
1 g10100.t2 Pfam PF00378 Enoyl-CoA hydratase/isomerase 11 115 0
3 g10100.t2 SUPERFAMILY SSF52096 ClpP/crotonase 4 117 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0003824 catalytic activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values