General information for g10100.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g10100 is located on chr_1: 7357846..7358797 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10100 | g10100.t3 | TSS | g10100.t3 | 7357825 | 7357825 |
| chr_1 | g10100 | g10100.t3 | isoform | g10100.t3 | 7357846 | 7358797 |
| chr_1 | g10100 | g10100.t3 | exon | g10100.t3.exon1 | 7357846 | 7358797 |
| chr_1 | g10100 | g10100.t3 | cds | g10100.t3.CDS1 | 7358334 | 7358726 |
| chr_1 | g10100 | g10100.t3 | TTS | g10100.t3 | 7358803 | 7358803 |
Sequences
>g10100.t3 Gene=g10100 Length=952
AGGTAAAAGATGTTGGTGCAATACGCCAAGTAACAATAAATAATCCACGTAAAAAGAATG
CTTTAAATCGCAAGGCTTATATTGCCATAGCAAAGCTCTTAAACGATGCTGGCAAAGACA
ATAAAGTCAAGTGTTTGATATTAACTGGAAAGGGAGATTTCTTCAGGTGAGTTTCATAAT
TTATTTGTTTAGTATTTCTTTACAGTTTTTTATATAGCTCAGGAAATGACTTGACACAAG
ACTTTAGTGATTATCCAAATGATTCAATTAGAGAGCAACCAGTAACAATAATGATTGAAG
CTTTTATAAAATTTTCTAAACTACTTGTTGCACTTGTAAATGGACCAGCTATCGGAATTG
GCACAACAATGCTTGGACTATGTGATATTGTTTATTGCTCTGAAAATGCCTATTTTTATA
CACCTTTTACTGCCTTAGGTAAGATAAATGAGAGGCTGCTCAGCAAATGAGTTACAAATA
GCAACACTATGATGATAAATAAACACTCACTAAATTCATCTTATGTATTAGGCTTATGTG
CTGAAGGGTGTTCGTCACAAACATTTCCTATCATTATGGGCCAGAGCATAGCAAATGAAA
TGTTGTTTCTTAATAAAAAGATGTCTGCGCAAGAGGCATATCGAGTTGGTTTCGTTGCTC
AGATTTATAAACATGAATCAGAGATTTTTGAAAAGTTAAAAGGCATTGAAACACTTTCAC
TTAGTTCTATTATGGCAAACAAAAAGCTCATGAGAGGTCCTCTAATTGAGAATTTAATGA
AAGTCAACTTGGCGGAAGTGGGAGAAATTGGAAAATTATTTCAAAGTGATGAGGCAATAG
AAGCAATGATTAGGTTTGCATCAAGAAAGAGTAAATTATGATTGTTTATGTAAATATCTG
GTTTAAAAGGACTAAGAAAAATACATTCCAAATAAAATTAACTAAATGAAAG
>g10100.t3 Gene=g10100 Length=130
MMINKHSLNSSYVLGLCAEGCSSQTFPIIMGQSIANEMLFLNKKMSAQEAYRVGFVAQIY
KHESEIFEKLKGIETLSLSSIMANKKLMRGPLIENLMKVNLAEVGEIGKLFQSDEAIEAM
IRFASRKSKL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g10100.t3 | Gene3D | G3DSA:3.90.226.10 | - | 10 | 75 | 4.7E-12 |
| 4 | g10100.t3 | Gene3D | G3DSA:1.10.12.10 | - | 76 | 126 | 1.1E-9 |
| 2 | g10100.t3 | PANTHER | PTHR43684 | - | 14 | 129 | 3.3E-26 |
| 1 | g10100.t3 | Pfam | PF00378 | Enoyl-CoA hydratase/isomerase | 13 | 127 | 4.7E-10 |
| 7 | g10100.t3 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 23 | - |
| 8 | g10100.t3 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 9 | - |
| 9 | g10100.t3 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 10 | 18 | - |
| 10 | g10100.t3 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 19 | 23 | - |
| 6 | g10100.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 24 | 130 | - |
| 3 | g10100.t3 | SUPERFAMILY | SSF52096 | ClpP/crotonase | 14 | 120 | 1.93E-16 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003824 | catalytic activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
