General information for g10108.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Phosphatidylinositol N-acetylglucosaminyltransferase subunit Q.
Parent gene
- The parent gene g10108 is located on chr_1: 7476657..7482070 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10108 | g10108.t1 | TSS | g10108.t1 | 7475052 | 7475052 |
| chr_1 | g10108 | g10108.t1 | isoform | g10108.t1 | 7475110 | 7476657 |
| chr_1 | g10108 | g10108.t1 | exon | g10108.t1.exon1 | 7475110 | 7476115 |
| chr_1 | g10108 | g10108.t1 | cds | g10108.t1.CDS1 | 7475110 | 7476115 |
| chr_1 | g10108 | g10108.t1 | exon | g10108.t1.exon2 | 7476165 | 7476280 |
| chr_1 | g10108 | g10108.t1 | cds | g10108.t1.CDS2 | 7476165 | 7476280 |
| chr_1 | g10108 | g10108.t1 | exon | g10108.t1.exon3 | 7476334 | 7476657 |
| chr_1 | g10108 | g10108.t1 | cds | g10108.t1.CDS3 | 7476334 | 7476657 |
| chr_1 | g10108 | g10108.t1 | TTS | g10108.t1 | 7476679 | 7476679 |
Sequences
>g10108.t1 Gene=g10108 Length=1446
ATGGAAATTCACATATATTTACCAAATAATTATAATAAATTTAAATATTACTATGGCCAA
AAAAGAATTGAGACTAGAAAAACAATCCAAATTAAAGTTTATTATGTGACAAAATGTACA
AACGAATTTCAAAATAACACCAGCAATTTGATTTTGCTTGGATGTTGTGAAAATAAAGAT
ACGATAGCTAATTTTAATCTTTTTCTTAATCAAGAACGTGAAAAGATTCTAAACATCAAA
TTAGAAAGAGAAAAATGCTCTGGTGTAATGATTTTTAATTACAAACCAACAATGTTTAAG
AATTTTAGAAAAAATGACTACACAAATGAAGTAACAGATCAATATTTCTTTCTCTATCTT
GCTAATCTACTGCAATCGCAAGAACCAGAACATATTTTTCAACCAACAAAGTTAATTTAC
AATACATTAGATTCATTTGCAAAAATAGCAACAACAATTTTAAAGCCATTTTCTTTAGTT
TTTCACAAAACTGCAATTCATCAACATGCAATAATTTGGAGGAGAGAGTTCAATGAAAAA
CGTCAAAGGAATGGATCAATCCTGTTTGATGTGTTGCTTGGTTTAATGATTTGTTTTCTA
ATGTATCACATGCAAAATCCAGAGAGCTACTTCATGAGTGTTACTGAATTCATTCTTGAA
AAATTGAGAATGCTATTGGAATTACTTGATGGTTCACCTGTTGGATTAAAACTAAATGTT
CAATTAAATAATTTTCTGCTTAAATGTTTCATGTATCATGTTGATTTATGGTGGAATTTT
ATAATAATCGTTGAGCCAGCAATAAGATATCTCTTTATTCCCATAACAATTCTTGGAATT
TTAGGCTTTTCGTTTCAATGTGCAATGCTCTGTGACATAATTACTTTGATTTCACTACAT
GCTCATTGTTTTTATATATATGCTGCCATGCTCTACAAATTGGAACTAACAACTTTGCGA
TCACTATGGAGAATGGTGATAGGACGACGATTAAATATTTTAAAAAATAGAGTCGAATCA
CAAAAATATTCAAATAGACAACTATTTTTGGCAACCTTATTCTTTACAACATTGTTGTTT
CTTCTGCCAACAGTATTAGTTTATTATTTTGTATTTGCAGCCTTGAGGATGCTCATCTAT
GGACTAACATTTGTACTCTTAACTTTACAACAAATGGTATTGAAATGTTCATTATATGAT
TATTTAAATTGGATTATTGGAAAACATTCGCACCCTGAAAATATTTCAATAGACTTGGTG
TCACACGTTATTCAAGAACAATTTGATCTCTATCAATTTCAAATGACAAATTACAAATCA
TCTCCATGGAAATCGTCAGAATTTATGAAAACCAACGATGATAATTTTAATAAACCTATT
CCTTTAGATAAATTTTTCAAGAAGTTATTATGTGGAGATTTAATGGCATTTTCTAATGTT
GAATAA
>g10108.t1 Gene=g10108 Length=481
MEIHIYLPNNYNKFKYYYGQKRIETRKTIQIKVYYVTKCTNEFQNNTSNLILLGCCENKD
TIANFNLFLNQEREKILNIKLEREKCSGVMIFNYKPTMFKNFRKNDYTNEVTDQYFFLYL
ANLLQSQEPEHIFQPTKLIYNTLDSFAKIATTILKPFSLVFHKTAIHQHAIIWRREFNEK
RQRNGSILFDVLLGLMICFLMYHMQNPESYFMSVTEFILEKLRMLLELLDGSPVGLKLNV
QLNNFLLKCFMYHVDLWWNFIIIVEPAIRYLFIPITILGILGFSFQCAMLCDIITLISLH
AHCFYIYAAMLYKLELTTLRSLWRMVIGRRLNILKNRVESQKYSNRQLFLATLFFTTLLF
LLPTVLVYYFVFAALRMLIYGLTFVLLTLQQMVLKCSLYDYLNWIIGKHSHPENISIDLV
SHVIQEQFDLYQFQMTNYKSSPWKSSEFMKTNDDNFNKPIPLDKFFKKLLCGDLMAFSNV
E
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g10108.t1 | PANTHER | PTHR21329 | PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT Q-RELATED | 165 | 474 | 3.2E-69 |
| 1 | g10108.t1 | Pfam | PF05024 | N-acetylglucosaminyl transferase component (Gpi1) | 186 | 365 | 5.2E-50 |
| 10 | g10108.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 186 | - |
| 17 | g10108.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 187 | 204 | - |
| 12 | g10108.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 205 | 244 | - |
| 16 | g10108.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 245 | 264 | - |
| 8 | g10108.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 265 | 270 | - |
| 15 | g10108.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 271 | 298 | - |
| 13 | g10108.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 299 | 303 | - |
| 20 | g10108.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 304 | 327 | - |
| 11 | g10108.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 328 | 347 | - |
| 18 | g10108.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 348 | 371 | - |
| 14 | g10108.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 372 | 376 | - |
| 19 | g10108.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 377 | 394 | - |
| 9 | g10108.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 395 | 481 | - |
| 7 | g10108.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 185 | 204 | - |
| 6 | g10108.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 261 | 283 | - |
| 4 | g10108.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 290 | 312 | - |
| 3 | g10108.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 348 | 370 | - |
| 5 | g10108.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 372 | 394 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006506 | GPI anchor biosynthetic process | BP |
| GO:0017176 | phosphatidylinositol N-acetylglucosaminyltransferase activity | MF |
| GO:0016021 | integral component of membrane | CC |
KEGG
Orthology
- This transcript has been annotated with K03860 (phosphatidylinositol N-acetylglucosaminyltransferase subunit Q)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
