General information for g10124.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative D-aspartate oxidase.
Parent gene
- The parent gene g10124 is located on chr_1: 7635254..7635806 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10124 | g10124.t4 | TTS | g10124.t4 | 7634570 | 7634570 |
| chr_1 | g10124 | g10124.t4 | isoform | g10124.t4 | 7634680 | 7635806 |
| chr_1 | g10124 | g10124.t4 | exon | g10124.t4.exon1 | 7634680 | 7635375 |
| chr_1 | g10124 | g10124.t4 | cds | g10124.t4.CDS1 | 7634680 | 7635375 |
| chr_1 | g10124 | g10124.t4 | exon | g10124.t4.exon2 | 7635440 | 7635600 |
| chr_1 | g10124 | g10124.t4 | cds | g10124.t4.CDS2 | 7635440 | 7635600 |
| chr_1 | g10124 | g10124.t4 | exon | g10124.t4.exon3 | 7635661 | 7635806 |
| chr_1 | g10124 | g10124.t4 | cds | g10124.t4.CDS3 | 7635661 | 7635682 |
| chr_1 | g10124 | g10124.t4 | TSS | g10124.t4 | 7635846 | 7635846 |
Sequences
>g10124.t4 Gene=g10124 Length=1003
ATGAAGATAGGAATTGTAGGCTCTGGCGTTATTGGATTAACAACTGCATTAGAATTGCAT
AAAGAATATCGAAATGCTTCAATAACGATCATTGCAGATAAGTTTGATAAAGAGACAGTG
AGTTATGTTGCTGCTGGCATTTTTCGGAACTGCATTTAGTGGACCAACTGAAGAAATCAC
TAAAAAATGGATAGTTGATGCATATGACCACTGGAACGAAATTAGAAAGACATCGGAAGC
AAGTAAAGCAGGTATCACTGAAATATCTGGTTATATTTTCTCTTCAATATCGGAATCAAT
CACTCGAAACCCATTAATTGAAGATGTTTTACCAGTTTATCGTCGTGCGACTGAAGAAGA
GCTAAAAATTTGTCCTGGCAGCTGGAAATACGGTAGCTTCTTTACAACACTCGTTACTGA
ATGTGCACTCTATTTACCTTGGGCTTCTAAAAAATTTGAATCAAACGGAGGAAAAGTTTT
TCACAAAAAAGTCAACAGTTTTAGTGATTTATATGGCGATTATGACATAATTATCAACTG
TACTGGAATGAATGCAAAACAATTGTGTAATGATCGAAAACTTGTTCCGATTCGTGGTCA
AATTTTAAAAGTTGATGCTCCTTGGCTTAAAATGGCATATTATGGAGATTATGATACATA
TATAGTACCAGGTTTTAGCAGTGTTACTTTGGGTGGTTGCAGAAATTTTGAAAGTTATGA
TATGAATCCGAGTCCTCATGATACTGCTGCAATTAAAGAACGCTGCGAATCTTTGGTTCC
AGGTTTGAAAACAGCAAAACTGAAGGAAATTCGTGTTGGCTTGCGTCCGCATCGCGACCC
ATGTCGTGTTGAGACAGAATTTATTGATATACCTAATAAAGGTGTGTTGAGAATTGTGCA
TCAATATGGTCACGGCGGATACGGAGTTACTACAGCTCCGGGAACTGCTAAGTATGCTAC
AAAGCTTGTTAAAGATGTATGGACTGGATATAGTCGTCTGTAA
>g10124.t4 Gene=g10124 Length=292
MLLLAFFGTAFSGPTEEITKKWIVDAYDHWNEIRKTSEASKAGITEISGYIFSSISESIT
RNPLIEDVLPVYRRATEEELKICPGSWKYGSFFTTLVTECALYLPWASKKFESNGGKVFH
KKVNSFSDLYGDYDIIINCTGMNAKQLCNDRKLVPIRGQILKVDAPWLKMAYYGDYDTYI
VPGFSSVTLGGCRNFESYDMNPSPHDTAAIKERCESLVPGLKTAKLKEIRVGLRPHRDPC
RVETEFIDIPNKGVLRIVHQYGHGGYGVTTAPGTAKYATKLVKDVWTGYSRL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g10124.t4 | Gene3D | G3DSA:3.40.50.720 | - | 8 | 281 | 3.3E-72 |
| 8 | g10124.t4 | Gene3D | G3DSA:3.30.9.10 | - | 44 | 236 | 3.3E-72 |
| 2 | g10124.t4 | PANTHER | PTHR11530 | D-AMINO ACID OXIDASE | 8 | 292 | 1.6E-138 |
| 3 | g10124.t4 | PANTHER | PTHR11530:SF17 | RE49860P | 8 | 292 | 1.6E-138 |
| 1 | g10124.t4 | Pfam | PF01266 | FAD dependent oxidoreductase | 21 | 280 | 3.4E-24 |
| 10 | g10124.t4 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 12 | - |
| 11 | g10124.t4 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 1 | - |
| 12 | g10124.t4 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 2 | 7 | - |
| 13 | g10124.t4 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 8 | 12 | - |
| 9 | g10124.t4 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 13 | 292 | - |
| 4 | g10124.t4 | SUPERFAMILY | SSF51971 | Nucleotide-binding domain | 18 | 287 | 1.06E-14 |
| 5 | g10124.t4 | SUPERFAMILY | SSF54373 | FAD-linked reductases, C-terminal domain | 153 | 237 | 1.44E-18 |
| 6 | g10124.t4 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 12 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0046416 | D-amino acid metabolic process | BP |
| GO:0003884 | D-amino-acid oxidase activity | MF |
| GO:0055114 | NA | NA |
| GO:0071949 | FAD binding | MF |
| GO:0016491 | oxidoreductase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
