Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10124 g10124.t5 TTS g10124.t5 7634570 7634570
chr_1 g10124 g10124.t5 isoform g10124.t5 7635254 7635806
chr_1 g10124 g10124.t5 exon g10124.t5.exon1 7635254 7635301
chr_1 g10124 g10124.t5 cds g10124.t5.CDS1 7635256 7635301
chr_1 g10124 g10124.t5 exon g10124.t5.exon2 7635408 7635605
chr_1 g10124 g10124.t5 cds g10124.t5.CDS2 7635408 7635605
chr_1 g10124 g10124.t5 exon g10124.t5.exon3 7635661 7635806
chr_1 g10124 g10124.t5 cds g10124.t5.CDS3 7635661 7635806
chr_1 g10124 g10124.t5 TSS g10124.t5 7635846 7635846

Sequences

>g10124.t5 Gene=g10124 Length=392
ATGAAGATAGGAATTGTAGGCTCTGGCGTTATTGGATTAACAACTGCATTAGAATTGCAT
AAAGAATATCGAAATGCTTCAATAACGATCATTGCAGATAAGTTTGATAAAGAGACAGTG
AGTTATGTTGCTGCTGGCATTTTTCGACCAGGAACTGCATTTAGTGGACCAACTGAAGAA
ATCACTAAAAAATGGATAGTTGATGCATATGACCACTGGAACGAAATTAGAAAGACATCG
GAAGCAAGTAAAGCAGGTATCACTGAAATATCTGGTTATATTTTCTCTTCAATATCGGAA
TCAATCACTCGAGTAAGTCAATTCATTATGCCTTATCTTATCATCTGGAAATACGGTAGC
TTCTTTACAACACTCGTTACTGAATGTGCACT

>g10124.t5 Gene=g10124 Length=130
MKIGIVGSGVIGLTTALELHKEYRNASITIIADKFDKETVSYVAAGIFRPGTAFSGPTEE
ITKKWIVDAYDHWNEIRKTSEASKAGITEISGYIFSSISESITRVSQFIMPYLIIWKYGS
FFTTLVTECA

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g10124.t5 Gene3D G3DSA:3.40.50.720 - 1 107 0e+00
2 g10124.t5 PANTHER PTHR11530 D-AMINO ACID OXIDASE 2 129 0e+00
3 g10124.t5 PANTHER PTHR11530:SF17 RE49860P 2 129 0e+00
1 g10124.t5 Pfam PF01266 FAD dependent oxidoreductase 3 80 0e+00
4 g10124.t5 SUPERFAMILY SSF51971 Nucleotide-binding domain 1 98 8e-07

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0046416 D-amino acid metabolic process BP
GO:0003884 D-amino-acid oxidase activity MF
GO:0055114 NA NA
GO:0071949 FAD binding MF
GO:0016491 oxidoreductase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed