General information for g10126.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative 39S ribosomal protein L14, mitochondrial.
Parent gene
- The parent gene g10126 is located on chr_1: 7637046..7637510 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10126 | g10126.t2 | isoform | g10126.t2 | 7636975 | 7637510 |
| chr_1 | g10126 | g10126.t2 | exon | g10126.t2.exon1 | 7636975 | 7636981 |
| chr_1 | g10126 | g10126.t2 | exon | g10126.t2.exon2 | 7637044 | 7637510 |
| chr_1 | g10126 | g10126.t2 | cds | g10126.t2.CDS1 | 7637046 | 7637510 |
| chr_1 | g10126 | g10126.t2 | TTS | g10126.t2 | 7637561 | 7637561 |
| chr_1 | g10126 | g10126.t2 | TSS | g10126.t2 | NA | NA |
Sequences
>g10126.t2 Gene=g10126 Length=474
CCTAAAAATATGCAAACAACATCAATACTATCAAATTTGAGAGCTGTCACTAGTGTATTT
TCAAAAAGTCATTTTCATACTACATCAATTTGTAATGAAGTTCGGCTTTTAACAAGATTA
AGAGTAGTAGATAATAGTGAAATAGGGAAGCAAGCAATGATGGAAGGAAAGCCTCCAAAA
ACGATTCATGTATATAATCGACAACATGTCGGATATATTGGCGACAAAGTTATGGTTGCA
ATTAAAGGTCAAAAGAAGAAAGGAATTTTAGTTGGATTAAAACAAATGCAAAAAGTAAGA
GTTCCTCGCTTTGATTCAAATAATGTTGTTTTAATAGATGATAATGGCACACCTCTTGGA
ACAAGAATATTTGTTCCAATTCCCACAATTTTAAGAACAATTTTGAAAAAGAAAACTTTA
GCAAAAGGAGCTGATTATACAAAATTATTGGCTATTGCTAGTAGATTTGTGTAA
>g10126.t2 Gene=g10126 Length=154
MQTTSILSNLRAVTSVFSKSHFHTTSICNEVRLLTRLRVVDNSEIGKQAMMEGKPPKTIH
VYNRQHVGYIGDKVMVAIKGQKKKGILVGLKQMQKVRVPRFDSNNVVLIDDNGTPLGTRI
FVPIPTILRTILKKKTLAKGADYTKLLAIASRFV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g10126.t2 | Gene3D | G3DSA:2.40.150.20 | Ribosomal Protein L14; | 30 | 154 | 0.00000 |
| 4 | g10126.t2 | Hamap | MF_01367 | 50S ribosomal protein L14 [rplN]. | 30 | 154 | 15.68896 |
| 2 | g10126.t2 | PANTHER | PTHR21037:SF3 | 39S RIBOSOMAL PROTEIN L14, MITOCHONDRIAL | 5 | 154 | 0.00000 |
| 3 | g10126.t2 | PANTHER | PTHR21037 | 39S RIBOSOMAL PROTEIN L14, MITOCHONDRIAL | 5 | 154 | 0.00000 |
| 1 | g10126.t2 | Pfam | PF00238 | Ribosomal protein L14p/L23e | 33 | 134 | 0.00000 |
| 6 | g10126.t2 | SMART | SM01374 | Ribosomal_L14_2 | 30 | 154 | 0.00000 |
| 5 | g10126.t2 | SUPERFAMILY | SSF50193 | Ribosomal protein L14 | 33 | 154 | 0.00000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005840 | ribosome | CC |
| GO:0006412 | translation | BP |
| GO:0003735 | structural constituent of ribosome | MF |
KEGG
Orthology
- This transcript has been annotated with K02874 (large subunit ribosomal protein L14)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
