General information for g10140.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as ABC transporter G family member 23.
Parent gene
- The parent gene g10140 is located on chr_1: 7732048..7733511 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10140 | g10140.t1 | TTS | g10140.t1 | 7729074 | 7729074 |
| chr_1 | g10140 | g10140.t1 | isoform | g10140.t1 | 7729467 | 7733511 |
| chr_1 | g10140 | g10140.t1 | exon | g10140.t1.exon1 | 7729467 | 7729674 |
| chr_1 | g10140 | g10140.t1 | cds | g10140.t1.CDS1 | 7729467 | 7729674 |
| chr_1 | g10140 | g10140.t1 | exon | g10140.t1.exon2 | 7729742 | 7730104 |
| chr_1 | g10140 | g10140.t1 | cds | g10140.t1.CDS2 | 7729742 | 7730104 |
| chr_1 | g10140 | g10140.t1 | exon | g10140.t1.exon3 | 7730378 | 7730968 |
| chr_1 | g10140 | g10140.t1 | cds | g10140.t1.CDS3 | 7730378 | 7730968 |
| chr_1 | g10140 | g10140.t1 | exon | g10140.t1.exon4 | 7731026 | 7731844 |
| chr_1 | g10140 | g10140.t1 | cds | g10140.t1.CDS4 | 7731026 | 7731844 |
| chr_1 | g10140 | g10140.t1 | exon | g10140.t1.exon5 | 7731912 | 7732048 |
| chr_1 | g10140 | g10140.t1 | cds | g10140.t1.CDS5 | 7731912 | 7732048 |
| chr_1 | g10140 | g10140.t1 | exon | g10140.t1.exon6 | 7733431 | 7733511 |
| chr_1 | g10140 | g10140.t1 | cds | g10140.t1.CDS6 | 7733431 | 7733511 |
| chr_1 | g10140 | g10140.t1 | TSS | g10140.t1 | NA | NA |
Sequences
>g10140.t1 Gene=g10140 Length=2199
ATGAATATTCGAGTGAGTGAAGGAAGTAGAATGGATCATAAATTAAATCGATTGAGAAGA
AAGATAATGAAGGCAGAAAAGTTCTTGTTTGTCAGCACACTTGATCACATCATGAATAGT
GTTGAAGTCAGAGATGCTTTCATTAGTTATCACAATGAAAGTACAAAACAAAAGTTTATT
TTAAATGGATTAAATATGACAGTTGCACCAAGTTCAATATATGCTTTAATTGGTGCTTCG
GGATGTGGTAAAACAACTTTACTTTCTTGTATTTTGGGAATGAAAGAACTTGATTCTGGG
ACAATAAAAGTTTTGGGACATAAAGTTACATCAAAAAAACAAAATAAAGTTGCACGGTCA
ATTGGTTTTATGCCACAGGATATTGCACTTTCACCACAATTAACAATCGGTGAAACATTA
AAATATTTCGGAAATATTTTCCTTATGAGTGAACAAAAATTAGAAGAAAGATCACATATG
ATCAAAGAATTGCTTGAACTACCGCCTGATGATAGATTAATTGAAAATTTATCAGGTGGT
CAAAGAAGAAGAGTGTCATTAGCAGCAGCAATCATTCATAATCCTCAAATTTTAATTCTT
GATGAACCTACAGTCGGTGTTGATTCAATACTTCGCGACAAAATTTGGAAATTTTTAATT
AAATCAACACGCGAAAGCAATTTATCAATTATCATCACAACTCACTATATTTCTGAAGCA
CAACAGTCAGATAGATGTGGAATGATGAGAGATGGTGTTCTACTGGCTGAGGATTCACCA
AGAAACATTTTGCTAAAATATGAAGCAGATAGCTTAGATGAAGCATTTTTAAATTTATGC
AAATTGAATAAACAAGTTTTGCCAAATTCGCAAAATCCAATAGAAGTTGTATGTGATGGA
TACGTAAAGAATGACATTGGTGCAGGTCAAGAGAAAATTGATGAATTGTCTCATTTCAAA
GGAAAGCTTTTATATTACATTCAAATTATTTCTGCTTTATTTTCTAAAGAATGGGCATGC
TTTAAGCGTGGTAAAATGGATCTTTTATCAAATCTACTATATCTAACATTTTTAAGTATT
ATGCTTATGTTTGGTCCAGGCTCTGATCCAAGAGGTTTAAAAATAGGAATTGTAAATAAG
GAAGTGCTTGATCCATCATACTGTAAAGATTATTTAAGACAGAATATTTCATATCGTAAT
GAGTTCAATGACTGCATTTATGAACATTTGTCGTGTCATTTTCTAAATGAAATTCAAGAT
GAAGATTTTATCAAGGTTCATTACAACAATTTCAATGATTCTTACAAAGATGCAAAACAA
GGAAAATTAATTGCTGTCCTTGAAATTCAAAGAAATTTCTCTGAAGCTCTTCAGTATTTG
CACGAGAATTTCAATGCAAATGGTATTGAATTTAGTCAAGTTGGAGTGCATTTGGATCAA
ACTGATATGCAAATTTCAACATTCGTTCATAATCGACTTATGAAAGCTTATTTCAAATTT
GCTGAGAAAGTCATGGTTGGTTGTAAATATAACAAAGATTTTGTCAAGCCACCTTTGAAT
ATATCACCAATGTTTGGTTCACTTTACAAAAGTTTTAAGAAATCAATCCTACCTTTGTTT
ATTTTACAAGGAGCATATTTTCAATCATTTGGTTCATCATGCTACAGAATATCACAGAGT
AAAGTAGATGGAATTTGGAATCGAACACTTTTAGCTGGAGTCAATCCAATTGAAATCTTG
ATAGTTCAATTTATTTTTTCAATCGTCATAATGTTTGTGTCATTTTTAAGTGGAATATTG
GTGTTGTTTTTGTCAATCGGAATCACAGATTTCACAACAATTTTCGTTTCATTCATATTG
GGAATCTCGTTTTGCACAGCTGGCATTTTTATGAGTGTGTTGTTGTCATCGGTAACAAAA
AATGCAAGTTTTATAACAGCGTTTATATTTGGTGGATCAATTCTAGCGGTAACAACATCG
GGTTTGTTTTGGCCTGTTGACGGTCAACCAGAATGGCTTCAGCAAATTTCTTATTTTTTG
CCATTTGCTTACACATCAGATTCTTTACGTGATATTGTTATGAAAGGATCAACATTTCTT
GATTTTAATGTCATTAAAGGATTTGTAAATATTTTCTTTTGGATTATTGCGACATTTTTG
TTATCATTTTTGGTGATGAAGAAGAAAAAATTTTCATAG
>g10140.t1 Gene=g10140 Length=732
MNIRVSEGSRMDHKLNRLRRKIMKAEKFLFVSTLDHIMNSVEVRDAFISYHNESTKQKFI
LNGLNMTVAPSSIYALIGASGCGKTTLLSCILGMKELDSGTIKVLGHKVTSKKQNKVARS
IGFMPQDIALSPQLTIGETLKYFGNIFLMSEQKLEERSHMIKELLELPPDDRLIENLSGG
QRRRVSLAAAIIHNPQILILDEPTVGVDSILRDKIWKFLIKSTRESNLSIIITTHYISEA
QQSDRCGMMRDGVLLAEDSPRNILLKYEADSLDEAFLNLCKLNKQVLPNSQNPIEVVCDG
YVKNDIGAGQEKIDELSHFKGKLLYYIQIISALFSKEWACFKRGKMDLLSNLLYLTFLSI
MLMFGPGSDPRGLKIGIVNKEVLDPSYCKDYLRQNISYRNEFNDCIYEHLSCHFLNEIQD
EDFIKVHYNNFNDSYKDAKQGKLIAVLEIQRNFSEALQYLHENFNANGIEFSQVGVHLDQ
TDMQISTFVHNRLMKAYFKFAEKVMVGCKYNKDFVKPPLNISPMFGSLYKSFKKSILPLF
ILQGAYFQSFGSSCYRISQSKVDGIWNRTLLAGVNPIEILIVQFIFSIVIMFVSFLSGIL
VLFLSIGITDFTTIFVSFILGISFCTAGIFMSVLLSSVTKNASFITAFIFGGSILAVTTS
GLFWPVDGQPEWLQQISYFLPFAYTSDSLRDIVMKGSTFLDFNVIKGFVNIFFWIIATFL
LSFLVMKKKKFS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g10140.t1 | Gene3D | G3DSA:3.40.50.300 | - | 37 | 294 | 6.7E-59 |
| 3 | g10140.t1 | PANTHER | PTHR43038 | ATP-BINDING CASSETTE, SUB-FAMILY H, MEMBER 1 | 38 | 730 | 4.4E-164 |
| 4 | g10140.t1 | PANTHER | PTHR43038:SF2 | RH61964P | 38 | 730 | 4.4E-164 |
| 2 | g10140.t1 | Pfam | PF00005 | ABC transporter | 61 | 204 | 6.3E-32 |
| 1 | g10140.t1 | Pfam | PF12698 | ABC-2 family transporter protein | 358 | 720 | 4.1E-22 |
| 12 | g10140.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 347 | - |
| 17 | g10140.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 348 | 365 | - |
| 7 | g10140.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 366 | 583 | - |
| 14 | g10140.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 584 | 608 | - |
| 10 | g10140.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 609 | 613 | - |
| 13 | g10140.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 614 | 635 | - |
| 8 | g10140.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 636 | 641 | - |
| 16 | g10140.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 642 | 664 | - |
| 11 | g10140.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 665 | 703 | - |
| 15 | g10140.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 704 | 726 | - |
| 9 | g10140.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 727 | 732 | - |
| 23 | g10140.t1 | ProSitePatterns | PS00211 | ABC transporters family signature. | 177 | 191 | - |
| 25 | g10140.t1 | ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 41 | 276 | 19.688 |
| 24 | g10140.t1 | SMART | SM00382 | AAA_5 | 70 | 260 | 9.8E-9 |
| 5 | g10140.t1 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 39 | 266 | 2.71E-52 |
| 20 | g10140.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 536 | 558 | - |
| 21 | g10140.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 579 | 608 | - |
| 22 | g10140.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 613 | 635 | - |
| 19 | g10140.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 642 | 664 | - |
| 18 | g10140.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 704 | 726 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
| GO:0016887 | ATP hydrolysis activity | MF |
KEGG
Orthology
- This transcript has been annotated with K02010 (iron(III) transport system ATP-binding protein)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
