Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Bifunctional coenzyme A synthase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10149 g10149.t7 isoform g10149.t7 7789461 7790269
chr_1 g10149 g10149.t7 exon g10149.t7.exon1 7789461 7790269
chr_1 g10149 g10149.t7 cds g10149.t7.CDS1 7789675 7790250
chr_1 g10149 g10149.t7 TSS g10149.t7 7791289 7791289
chr_1 g10149 g10149.t7 TTS g10149.t7 NA NA

Sequences

>g10149.t7 Gene=g10149 Length=809
TGCATCAGGAAAAAGCAAAATGAGTGAGCGTTTTATGAAAATGGGTGCAGGCATCATTGA
TTGTGACAAATTGGCTCATTCAATTTATGAACCTGGTGAGGAATGTTATTATGAAATAAT
TAAAGAATTTGGAGAAGATTTAATTGATGTAAATGGAAGAATTGATAGAAAGAAACTTGG
TGCAATTGTTTTCTCGGATAAAAATAAGCTGCAACAGCTAAATCAAATTGTATGGCCTAA
TCTTTTGAAAAAGGCAAAAAACAAAATCAATGAGCTTTATGAAAAGGAGAAGCGTAAAAT
TGTTATTTTGGAAGCAGCAGTTTTAATTCAAGCGGGTTGGGAGAAAGAATGTCATGAAAT
TTGGTCAATGATAATTCCACCAGAAGTTGCTATAAAAAGACTCATGGAAAGAAACAATTT
GACTGAGGTAGAAGCCAAAGCACGTCTTGCATCGCAAGTGGATAATTCAGTCGTGGTCTC
ACATTCAAATGTAGTATTTTCATCTTTATGGAGCTATGAGTATTCACAAGCACAAGCTGA
AAAAGCTTGGAGCGAATTACTTAAGCGCCTTAACTTTTTATCTGGAAAAATTTAGTATCA
TATACAGTTTTAGAGAATTTTTTAATTTGTTAATAATTATTTTATATATTGTTATTTTGG
TGACTTGGAATTTTATTACTTAAAGTAATTTCAAAGATATTAAAAAATATAAAAAGTCGT
ACAAATTTGGGGAATGCATTTAAAACTTTATCTAACAGGCTTTTCTTTTTTTTATACATA
TATCTACACAGGAATCACTAGATAAATAC

>g10149.t7 Gene=g10149 Length=191
MSERFMKMGAGIIDCDKLAHSIYEPGEECYYEIIKEFGEDLIDVNGRIDRKKLGAIVFSD
KNKLQQLNQIVWPNLLKKAKNKINELYEKEKRKIVILEAAVLIQAGWEKECHEIWSMIIP
PEVAIKRLMERNNLTEVEAKARLASQVDNSVVVSHSNVVFSSLWSYEYSQAQAEKAWSEL
LKRLNFLSGKI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g10149.t7 CDD cd02022 DPCK 2 148 8.15416E-50
7 g10149.t7 Coils Coil Coil 80 100 -
6 g10149.t7 Gene3D G3DSA:3.40.50.300 - 1 188 2.7E-63
4 g10149.t7 Hamap MF_00376 Dephospho-CoA kinase [coaE]. 3 183 13.898326
2 g10149.t7 PANTHER PTHR10695:SF49 BIFUNCTIONAL PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE-DEPHOSPHO-COA KINASE 1 185 3.2E-82
3 g10149.t7 PANTHER PTHR10695 DEPHOSPHO-COA KINASE-RELATED 1 185 3.2E-82
1 g10149.t7 Pfam PF01121 Dephospho-CoA kinase 2 160 2.9E-35
10 g10149.t7 ProSiteProfiles PS51219 Dephospho-CoA kinase (DPCK) domain profile. 1 191 41.569
5 g10149.t7 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 6 178 2.72E-19
9 g10149.t7 TIGRFAM TIGR00152 TIGR00152: dephospho-CoA kinase 9 171 8.4E-36

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0004140 dephospho-CoA kinase activity MF
GO:0015937 coenzyme A biosynthetic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values