General information for g10167.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as histone-arginine N-methyltransferase.
Parent gene
- The parent gene g10167 is located on chr_1: 8023703..8024892 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10167 | g10167.t3 | isoform | g10167.t3 | 8021733 | 8022595 |
| chr_1 | g10167 | g10167.t3 | exon | g10167.t3.exon1 | 8021733 | 8022595 |
| chr_1 | g10167 | g10167.t3 | cds | g10167.t3.CDS1 | 8021735 | 8022337 |
| chr_1 | g10167 | g10167.t3 | TSS | g10167.t3 | NA | NA |
| chr_1 | g10167 | g10167.t3 | TTS | g10167.t3 | NA | NA |
Sequences
>g10167.t3 Gene=g10167 Length=863
AAAGTGGCATCAATATCACCTTCAACATCACAACAGCAGCTAACAAATTCATCACAAAAT
CAAATTATTCATCCATCAAATGTTGCAACATCTGATAGTCTAAGACAGAGGAATTTAATT
AAAGGTCCTCGTGTGAAACATGTTTGTCGGTCTGCTTCTCTTGTGCTTGGTTTACCGATT
GCCGTTTTCCCTGGTGATTCTGAATCTCAGAATGCAGAAGAAAATGCTGCAACAGAGACA
ATTGTGACTGATGATCAAATGTTGAATGAGAATTCAGAAAAGGAAAATGTTGCATTTACA
GCGATAGAAACAAAAGCTGAAGAACTTATTGAACCGAATAAAGAAAAAGAATTATCACAG
AAGAATGAAGAAACAAATATTGTCGTTGAAAAAGTTGAAGAAGCAGAAATAAATGAAGAG
AAGGAAAATATCAAATCGAGATCTGAAATTGCAATTAATGATCTACTGGCGATAAGAAAG
ATTGAAACAGCAGACATTTGCAAACCAATAACACGTAAAGTGACACGACCAACTCTTACA
TTATCTCAAACACAAAATGCTACAATGAATCGAATATCAATGAAAATTCCAACATCAAAG
CGACTTTTATTTAATCAGCATATGAGAAATAACAACAGTAATTTACCGCCAATGATATCG
ATAGATTTTTGGGAAAATTATGATCCAGCTGAAGTCAGTCGCACAGGTTTTGGACTCATA
TTAAGTGAGAAAACACCTATAAAGTCAGTTTGCTTCCTCTGTGGTAGCTATGGAACTGAT
CCTTTAATCTTCTGTGTATGTTGCTGTGAACCTTATCACTTTTTTTGTGTTGAAAATGAA
TTTAATGTAAGATTTAAGACAAA
>g10167.t3 Gene=g10167 Length=201
MLNENSEKENVAFTAIETKAEELIEPNKEKELSQKNEETNIVVEKVEEAEINEEKENIKS
RSEIAINDLLAIRKIETADICKPITRKVTRPTLTLSQTQNATMNRISMKIPTSKRLLFNQ
HMRNNNSNLPPMISIDFWENYDPAEVSRTGFGLILSEKTPIKSVCFLCGSYGTDPLIFCV
CCCEPYHFFCVENEFNVRFKT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g10167.t3 | CDD | cd15506 | PHD1_KMT2A_like | 164 | 195 | 5.49857E-14 |
| 3 | g10167.t3 | Coils | Coil | Coil | 29 | 49 | - |
| 1 | g10167.t3 | PANTHER | PTHR45838 | HISTONE-LYSINE-N-METHYLTRANSFERASE 2 KMT2 FAMILY MEMBER | 11 | 193 | 4.7E-14 |
| 2 | g10167.t3 | SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 162 | 192 | 8.88E-6 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed