General information for g10177.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g10177 is located on chr_1: 8079769..8080957 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10177 | g10177.t6 | TTS | g10177.t6 | 8079525 | 8079525 |
| chr_1 | g10177 | g10177.t6 | isoform | g10177.t6 | 8079616 | 8080957 |
| chr_1 | g10177 | g10177.t6 | exon | g10177.t6.exon1 | 8079616 | 8080497 |
| chr_1 | g10177 | g10177.t6 | cds | g10177.t6.CDS1 | 8079769 | 8080131 |
| chr_1 | g10177 | g10177.t6 | exon | g10177.t6.exon2 | 8080558 | 8080957 |
| chr_1 | g10177 | g10177.t6 | TSS | g10177.t6 | NA | NA |
Sequences
>g10177.t6 Gene=g10177 Length=1282
TTTTCTATAAGTAAAATGTTGAAAATTATTAATATTTAATTTAATTAAAAATTATTACAA
GTTTTAAAAAGTTTCATGAACATTACTAATTGACTGCACATAGTTTGGTCGTGTAAATCA
ATGTACTTACTTGGTTTTTGTTTGAAATTTATTCCAACTCAATAATTTTACCAACAACAA
AAAACAATAGCGTAAACGTAGAGAATTTTACGTAAAATCAAACGTAATGAAAATAGCGTA
AAATATTTGAGTCCACAGTTGCATTTTGATGATAACTTTAGATAGAACATTTTAGTTCTT
GTCTTAGTATTTTAAAATTATTTTCAATTAATTAAAGTTTGAAAACCTGAAAACAAAAAT
GTTCAACTTGAATAAAATGTTTAAATTTCGAAATGACAAATAGGCCTGCCATTAAAAAAT
GTTTTCAAAATTTTTTCGTTTCGAAATTCGTTGTTGACCAAGCTTGCAAGTAAAATGGAT
AGTGTGAATAACATTTGCCAAAATTGTAATGAACTTTGGGTCTTTGGTTATGGATCATTG
GTAATTTAAAAAAAAATTTTTCATACACATCATTACAAAAAAATAATTAAATTTTTAGGT
ATGGAAGAATGCAGATTTTGAATTCGAAAGCAGTGTTGCAGGATTTTTAAAAGGATTCAA
AAGACGCTTTTATCAAAATAGCATTGATCATAGAGGAACAGAAAAATTTCCAGGTCGTGT
TGTTACGTTAATCAAGAGTGACGATCAAAATGAGAGAGTATATGGAATGGGTTATAAAAT
TTCAAATGACAAAATCATGAAAGTACTTAATCATTTAGACTATCGCGAAAAAAATGGATA
TGAACGCTGTGAAACATTTTTCTATCCTATCAATAATGAACAGCTCAAAAAGAAGACTAT
AGTTTATGTGGCAAATGAGACTAATCCATCATGGAATAGTGATCATGATTTACATTCTAT
TGCTCGTCAAGTATTTAAAGCCATTGGACCATCAGGTGATAATATTTCATATGTTTATAA
TCTCTGCAATGCAATGAGAGAGCATTTTCCAAATCATTATCATGAAGATAGGCATCTTTT
TGAACTTGAAAAATTACTCAAAGAAATGAAAGAGAAGGCTAGTGAATAAAAAGTACAGTG
TTCATTCTTTAAATTTTTCAAGAGTTTTTTTTTATTTTGTATGTTATCCTAATTCACTTT
TATTTTCTTTTGTGTTTCACAATTTTATTACAATTTTCTCCATCAAAAAAATTATCTCGT
TAGTTCGATATAGTAAAGAAAA
>g10177.t6 Gene=g10177 Length=120
MGYKISNDKIMKVLNHLDYREKNGYERCETFFYPINNEQLKKKTIVYVANETNPSWNSDH
DLHSIARQVFKAIGPSGDNISYVYNLCNAMREHFPNHYHEDRHLFELEKLLKEMKEKASE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g10177.t6 | Coils | Coil | Coil | 104 | 120 | - |
| 2 | g10177.t6 | PANTHER | PTHR12192:SF20 | GLUTATHIONE-SPECIFIC GAMMA-GLUTAMYLCYCLOTRANSFERASE 2 | 2 | 118 | 3.4E-31 |
| 3 | g10177.t6 | PANTHER | PTHR12192 | CATION TRANSPORT PROTEIN CHAC-RELATED | 2 | 118 | 3.4E-31 |
| 1 | g10177.t6 | Pfam | PF04752 | ChaC-like protein | 1 | 113 | 2.2E-25 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003839 | gamma-glutamylcyclotransferase activity | MF |
| GO:0006751 | glutathione catabolic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
