Gene loci information

Transcript annotation

  • This transcript has been annotated as Diacylglycerol kinase eta.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10179 g10179.t1 isoform g10179.t1 8086414 8130658
chr_1 g10179 g10179.t1 exon g10179.t1.exon1 8086414 8086527
chr_1 g10179 g10179.t1 cds g10179.t1.CDS1 8086414 8086527
chr_1 g10179 g10179.t1 exon g10179.t1.exon2 8091975 8092085
chr_1 g10179 g10179.t1 cds g10179.t1.CDS2 8091975 8092085
chr_1 g10179 g10179.t1 exon g10179.t1.exon3 8115134 8115214
chr_1 g10179 g10179.t1 cds g10179.t1.CDS3 8115134 8115214
chr_1 g10179 g10179.t1 exon g10179.t1.exon4 8123345 8123533
chr_1 g10179 g10179.t1 cds g10179.t1.CDS4 8123345 8123533
chr_1 g10179 g10179.t1 exon g10179.t1.exon5 8123597 8123726
chr_1 g10179 g10179.t1 cds g10179.t1.CDS5 8123597 8123726
chr_1 g10179 g10179.t1 exon g10179.t1.exon6 8123793 8124325
chr_1 g10179 g10179.t1 cds g10179.t1.CDS6 8123793 8124325
chr_1 g10179 g10179.t1 exon g10179.t1.exon7 8125069 8125332
chr_1 g10179 g10179.t1 cds g10179.t1.CDS7 8125069 8125332
chr_1 g10179 g10179.t1 exon g10179.t1.exon8 8125531 8125670
chr_1 g10179 g10179.t1 cds g10179.t1.CDS8 8125531 8125670
chr_1 g10179 g10179.t1 exon g10179.t1.exon9 8125747 8125881
chr_1 g10179 g10179.t1 cds g10179.t1.CDS9 8125747 8125881
chr_1 g10179 g10179.t1 exon g10179.t1.exon10 8125945 8126388
chr_1 g10179 g10179.t1 cds g10179.t1.CDS10 8125945 8126388
chr_1 g10179 g10179.t1 exon g10179.t1.exon11 8126511 8126982
chr_1 g10179 g10179.t1 cds g10179.t1.CDS11 8126511 8126982
chr_1 g10179 g10179.t1 exon g10179.t1.exon12 8127046 8127786
chr_1 g10179 g10179.t1 cds g10179.t1.CDS12 8127046 8127786
chr_1 g10179 g10179.t1 exon g10179.t1.exon13 8127853 8128248
chr_1 g10179 g10179.t1 cds g10179.t1.CDS13 8127853 8128248
chr_1 g10179 g10179.t1 exon g10179.t1.exon14 8128326 8128760
chr_1 g10179 g10179.t1 cds g10179.t1.CDS14 8128326 8128760
chr_1 g10179 g10179.t1 exon g10179.t1.exon15 8129247 8129370
chr_1 g10179 g10179.t1 cds g10179.t1.CDS15 8129247 8129370
chr_1 g10179 g10179.t1 exon g10179.t1.exon16 8129433 8129588
chr_1 g10179 g10179.t1 cds g10179.t1.CDS16 8129433 8129588
chr_1 g10179 g10179.t1 exon g10179.t1.exon17 8129706 8130658
chr_1 g10179 g10179.t1 cds g10179.t1.CDS17 8129706 8130658
chr_1 g10179 g10179.t1 TSS g10179.t1 NA NA
chr_1 g10179 g10179.t1 TTS g10179.t1 NA NA

Sequences

>g10179.t1 Gene=g10179 Length=5418
ATGGCCAAGCGCACTACATTCAAACATCATCATGAAGAATCATCGGAAAGTGAAGCTGAA
ATTGAACCAGCAAAAATCTTTCATAGAAGACTATCGACCAATATTAAATCATCTGTTGCT
ATCAAGGAAGGTTTTTTACTCAAACAAACATGGTCCTTTCAACGATGGAAACGGAGATAT
TTTCGATTAAGAGGCCATAAATTGTATTACGCAAAGACTCCTGACAGCGAGCTGTTTGAT
GAGATAGATTTATCGAATCTATGCTTTGCCGAGTGCGGTACGAAGAACATTAATCACACG
TTCCAGATTATAACTCCAACGCGTTCATTAGTGCTCGGAGCAGAATCTAGAAAAGAAATG
GAAGATTGGTGCCAAGCGTTGAAAAGTGCTGCCGCGCGAGATTTTTTTGATCCTGCACCA
CCTGATCAACTTGATTTTTTATCAGGCAATCACCATTGGTATGCGACAAGTCACGCACGA
CCAACATATTGTAACGTGTGTCGAGAAGCGTTGTCAGGCGTGACATCGCATGGTCTCTCG
TGTGAAGTTTGCAAATTTAAAGCACACAAGAGATGTGCAGCCAAAGCAATATCTAATTGT
AAATGGACCACATTAGCATCTATTGGGAAAGAAATTATAGAAGATCCAGATGGAAATCTA
CATATGCCTCATCAATGGCTCGAAGGAAATTTACCAGTGTCGGCAAAATGCATTCATTGT
GAGAAAACATGTGGATCAGTAATGCGATTGCAAGATTGGCGCTGTTTATGGTGCAAAGCA
ACAGTTCATACTTCATGTAGGCCAAATGTCGATATTCGTTGTAATATTGGACCGAGTCGA
GTCTCTGTGGTGCCACCGACATGTTTGCATTCAATTGGCGTCGATGATGCTTGGGATGTA
GTTAAACCTTGTGGCACACCATTTTCGCCACTACTTGTCTTTGTAAATACAAAGTCGGGT
GATAATTATCAAGGTGTAAAATTTTTTCGACGCTTCAAGCAATTACTTAATCCAGCTCAA
GTCTTTAACTTGCCATCAACTGGTCCTGAACTCGGTCTTAGATTATTTCGTCACTTTGAT
CCATTTAGAATTCTCATCTGTAGTGGTGATGGTTCAATTGGTTGGGTTTTATCAGAAATT
GATCGATTAAATATGCATAAACAGTGTCAAATAGCAGTTCTGCCATTGGGGACAGGCAAT
GATTTAGCAAGATGCTTAGGTTGGGGCGCTAGTTGCGATGACGACGCTCATTTACCACAA
CTGTTGGATCGCTATGAAAAATCATCGACAAAAATGCTAGATCGATGGAGTATTATGGTT
TTTGAACGAGGCATATCATTCCCAAGACGTGGCATGTCAATTTCACATTCACCCGATGCG
ATTTTATCACAATTTGAGGACAATTCAATGTGGCATTTGCAGTCAATTATCGAGACAGAC
GATTTTCAAGTTGTTATCGCATCAGTTCGTATTCTTTGCGAAACCGTCAACGATTTTGTA
GGACGTGTAACTGAAACACATCGTGATGATGAGCAATTGCTTATAAAATGTGATATTTTA
CGACAAAAGATGGGTATGCTATTAGATACATTGAAAGATGAAGAAACTGGTGCTCATGCA
GGTGATGATTTGCTAAAGACAATGGAGGAAATTGCATTTCGCAGTGCTAGCGAACGACGT
GAACGTACACCTGAGAATGAACCAAGAAAACGTAGATTTTCATTTGGTAAATCGGAAAAG
GATAAAATAAATACAAAAGAGCGAACTAGTCGATTAATGAAACGATCAGAAAAGGAAGCT
GTTCACTGTCGAGCCAACAGCTTGAAGCGAATTATTCATAATATTATTGAACATGTTGAT
GCAAAGAATAAAAGTGAGGGAAATTTTCGAAAAATGTCTTTAAGAGCAAATTTACCGCGG
TTTGTGCCAACTTCATCATCAGAGACGTCACCTTGTACCTCACCCCTTCCGATGCCATGT
GCATCAAATTTAGCAACATCGACAACACGACTGACGTGTATCTCACCACTACCTGATATT
CGAAGAGACTCAGTGGATGAGAATTTTTTTAATACGCTTAGTATTCCCGTACCTCATCAG
TTTGCTGATGAAAGCAGAAGAAATTCAGGTGTTCCTGAAAACATTATTGAAGTAGAAGAA
GAAAATTATTCAGAGAAAAGTGAAACATCATCGAAAATTTCAAATCTTCTGACTGTACGT
CATACGGAGAATATTTCACATTTTAAATATGATTTTACGACAATCAATCGTATTGATGAA
CGAAGAGATAGTGAATTTACATATAAGGTTAATTTAGAACAACGAGCCATAGGAGAAAAT
GAAGATAGTTTATTGGCATTTTGCCCAATAGAAGTTTATGAACGAAATCTTTTAAGAAAT
ATGCAACAGCAAAAAGAGCAACAAAAAGAAGATGAAGCTGCGTGTTCATCAGCTTTTTAT
AGAGTGTCACCAATGAGAGATGATGAAACTACAATGGTCTCAAATTCATTGCAAATACCT
GTCATCTCTTTGCCATCAATAGAGAAACCGCCGACAATTGAAAACGTCTATACAAGTGAT
AATATGACAATCATTGACACAGATGTTATGCCGGATCATTCATCGTCAGATGAAATAATT
GGTGAGACGAGTGACATTGTGTCAGCAATAAGCAACGAAGAGTGCAGTGTTGCATCAGAG
ATTCTTGATCAGCGTGCATCGGAATCATATTCTGTGAATGTAGGTGAAATGATTCAAGAT
CTGAATGATGACCGGATTGGACATATTGACAGTCCGGAAACGAGTGAAACTACTGATGCA
TTACACGGTGAAAGCTTAATTGATGATATGAGCTCAGTATTAGGACAAGATTTGTTCGGC
GTACTACAGGATAATACAATCACTGAAGATACAACGACACTCTGTTCAGCGGCCGATGCA
CATATTTTGCCACGCACTAATAGCAGAAATAGAAGTCTTAAAAATAAAAATTCTAAAGCA
TTAAACGAGGCAGCATCAGTAACAACACAATTTGGTTTTGAAAATAGAGTTTTTGATTTA
CACTCAAGTGATAAAGAATCACAACCAATTCGATATTGTAGCTTGGCAAAGTTTGAAGAA
GGCAATGATATAGCACGTAAAAGTTTCAGACTTTCACAAAAGACAACTACTAGAAGTGCC
TCGAAACAATTATCTAGTAGAAGAAATTTTACAAGTAGTAGTAATACGGATGATATTGAA
ACAATTAATATAACTTCAAGCGATACGACAACAACAACAACTACAATTGCAGAAAAACCA
ATTGAATGTGATAAAAACAGTAATTTATTAAACACAATTAAAATTCAAATACAGGGCTCA
ATGTCAGATTTGTCTGTCGAGACAGAATATGAAATTCCCAAAACACCAACAGAGCGAATC
GATTATAAAAATGCGATTCTCACGGATGTATCAGACAATGAAGATAAGGACGATAAGTAT
ACTGAGAAGAGGAAGCCAAATGTAAGTGTAGTCATTGACCCAGCATCACCAAAGATTAGC
GATCACTTGAGAGCACTTCGTGGTAGTGAGTACTATAGAAGACACTCGAGTCACACGCCC
GGCATTTTATCAGTACCACGTGAAGTGGATATCAATCGACGACATTCGAACCACAATCCC
AATCTACTCAATCTTGATGCGGAACATGCGAAATTTCTCAGCTGCTCACCCGCAGCTTCA
AGACGCATTAGCTGTGGTACATTATTTAAGGGCGGCGGTGAAGGTTTGTCTTTTGGGAGT
GCGAGAAATATTTTCAGTTCACGCAAAAGCATCAGTCGAGAGAAGGAGAAAGACAAGGAA
AACGATGAAAAACGAAAGGAGGAAGAGTCAAAACCCAAATCGCTTCCTATCATCAATCCA
CTCGTTCGTTTACCGTCATGGCCAAATGTTCAATCTGGCGCGGGTTTCATCTCAAAGTGT
TTGCTGGCAAATGCTGATACACTCTGCTCTCTAGCTTGTCCATTAATGGATCCAGATGAA
ACATTACTCGAGGGATTTTATGAGCGATGCGTAATGAATAATTATTTTGGTATTGGAATT
GATGCAAAGATTTCACTCGATTTTCATATGAAACGTGAAGAGCATCCTGAAAAGTGTAGA
TCGAGAGCGAAAAATTACATGTGGTACGGTGTGCTTGGTTCTAAGCAATGGCTTCAAAAG
ACTTATAAAAATCTTGAACAGCGTGTACAGTTGGAATGTGATGGACAGAGAATACCATTA
CCATCACTTCAGGGAATCGTCATATTAAACATTCCGAGTTTTATGGGTGGAACCAATTTT
TGGGGCGGTAGGAAAGAAGATGATATTTTCCTTGCACCAAGTTTTGACGACCGCATACTG
GAAGTTGTGGCAGTATTTGGAAGTGTGCAAATGGCAGCATGTCGGCTTATAAATCTACAA
CATCATCGTATCGCACAATGCCAGAGCGATGAAGGCGTTCCTATTCAGGTAGATGGAGAA
GCCTGGCTGCAACCACCTGGTATGATTCGAATTATTCACAAAAATCGCGTGCAAATGCTC
GCTCGAAATCGTAACTTGGAAGTTTCATTAAAATCATGGCAAGAGAAGCAACGACAACAT
AGCATCTCAATAGCACGCGAACAAACATCAGTGACTTCCGAATACAGTACAGCAATCGGT
GACAGTCTGTTTACTGAACGTGAGACATATCTTTTATTGAATTTCATCGAATGCGTGAGT
ACACTCGTAAAATGGGTCAAGTTTTTAATCATTTCTCATCCGTCATTGCAACCTGATTTA
TATGCAATTGCATCAAAAACTGCGGATTCACTTGAAGCTATTCATCCTGGTGGAAAGCTT
CTTGATGGTCCCAATTTGCGAACAAAGTTAACAGAACTCGTAGCATCAACACGTCAATTA
TATGAAAGCTCTTGCGAACTGTTACGTGAACGAAGTCACAGTCTCATAATGAGGGAAGAC
CTTGAGACAAAATTAAGTGTGGCACTCGCCAACATAGAAATGGAACTGAGAAAATGTACT
ATGCAGCGAACTGAAGATGGTTCAATGAAAATTTATCTCAATGTTCTTGCACCTAATAAT
GATGATTCAGAACAACATCGAAAGAAGGCCAAACCATTCTGGATGAGATTCCGTAATAAA
GAGCAACAGCAACCTTCAAATGTACGTTCAACAAGAAGCAGTTCACGCGAAGCTGTCACG
AATTGGGGTGTAAATGAAGTGATTGTATGGCTTGAGGCTTTACAATTATCAGAATATATA
GATAGTTTCATAAAGAATGATATACGTGGTAAAGAACTACTAACACTTGCCCGTAGAGAT
TTAAAAGAACTTGGTGTCACGAAAGTTGGGCATGTCAAGAGAATACTACTAGCTATTAAG
GATTTGCAAACAAATTAA

>g10179.t1 Gene=g10179 Length=1805
MAKRTTFKHHHEESSESEAEIEPAKIFHRRLSTNIKSSVAIKEGFLLKQTWSFQRWKRRY
FRLRGHKLYYAKTPDSELFDEIDLSNLCFAECGTKNINHTFQIITPTRSLVLGAESRKEM
EDWCQALKSAAARDFFDPAPPDQLDFLSGNHHWYATSHARPTYCNVCREALSGVTSHGLS
CEVCKFKAHKRCAAKAISNCKWTTLASIGKEIIEDPDGNLHMPHQWLEGNLPVSAKCIHC
EKTCGSVMRLQDWRCLWCKATVHTSCRPNVDIRCNIGPSRVSVVPPTCLHSIGVDDAWDV
VKPCGTPFSPLLVFVNTKSGDNYQGVKFFRRFKQLLNPAQVFNLPSTGPELGLRLFRHFD
PFRILICSGDGSIGWVLSEIDRLNMHKQCQIAVLPLGTGNDLARCLGWGASCDDDAHLPQ
LLDRYEKSSTKMLDRWSIMVFERGISFPRRGMSISHSPDAILSQFEDNSMWHLQSIIETD
DFQVVIASVRILCETVNDFVGRVTETHRDDEQLLIKCDILRQKMGMLLDTLKDEETGAHA
GDDLLKTMEEIAFRSASERRERTPENEPRKRRFSFGKSEKDKINTKERTSRLMKRSEKEA
VHCRANSLKRIIHNIIEHVDAKNKSEGNFRKMSLRANLPRFVPTSSSETSPCTSPLPMPC
ASNLATSTTRLTCISPLPDIRRDSVDENFFNTLSIPVPHQFADESRRNSGVPENIIEVEE
ENYSEKSETSSKISNLLTVRHTENISHFKYDFTTINRIDERRDSEFTYKVNLEQRAIGEN
EDSLLAFCPIEVYERNLLRNMQQQKEQQKEDEAACSSAFYRVSPMRDDETTMVSNSLQIP
VISLPSIEKPPTIENVYTSDNMTIIDTDVMPDHSSSDEIIGETSDIVSAISNEECSVASE
ILDQRASESYSVNVGEMIQDLNDDRIGHIDSPETSETTDALHGESLIDDMSSVLGQDLFG
VLQDNTITEDTTTLCSAADAHILPRTNSRNRSLKNKNSKALNEAASVTTQFGFENRVFDL
HSSDKESQPIRYCSLAKFEEGNDIARKSFRLSQKTTTRSASKQLSSRRNFTSSSNTDDIE
TINITSSDTTTTTTTIAEKPIECDKNSNLLNTIKIQIQGSMSDLSVETEYEIPKTPTERI
DYKNAILTDVSDNEDKDDKYTEKRKPNVSVVIDPASPKISDHLRALRGSEYYRRHSSHTP
GILSVPREVDINRRHSNHNPNLLNLDAEHAKFLSCSPAASRRISCGTLFKGGGEGLSFGS
ARNIFSSRKSISREKEKDKENDEKRKEEESKPKSLPIINPLVRLPSWPNVQSGAGFISKC
LLANADTLCSLACPLMDPDETLLEGFYERCVMNNYFGIGIDAKISLDFHMKREEHPEKCR
SRAKNYMWYGVLGSKQWLQKTYKNLEQRVQLECDGQRIPLPSLQGIVILNIPSFMGGTNF
WGGRKEDDIFLAPSFDDRILEVVAVFGSVQMAACRLINLQHHRIAQCQSDEGVPIQVDGE
AWLQPPGMIRIIHKNRVQMLARNRNLEVSLKSWQEKQRQHSISIAREQTSVTSEYSTAIG
DSLFTERETYLLLNFIECVSTLVKWVKFLIISHPSLQPDLYAIASKTADSLEAIHPGGKL
LDGPNLRTKLTELVASTRQLYESSCELLRERSHSLIMREDLETKLSVALANIEMELRKCT
MQRTEDGSMKIYLNVLAPNNDDSEQHRKKAKPFWMRFRNKEQQQPSNVRSTRSSSREAVT
NWGVNEVIVWLEALQLSEYIDSFIKNDIRGKELLTLARRDLKELGVTKVGHVKRILLAIK
DLQTN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
26 g10179.t1 CDD cd13274 PH_DGK_type2 41 137 1.08968E-49
24 g10179.t1 CDD cd00029 C1 151 200 7.10982E-18
25 g10179.t1 CDD cd00029 C1 224 274 8.53282E-12
23 g10179.t1 CDD cd09507 SAM_DGK-delta-eta 1738 1802 4.11195E-35
18 g10179.t1 Gene3D G3DSA:2.30.29.30 - 28 140 2.3E-29
21 g10179.t1 Gene3D G3DSA:3.30.60.20 - 143 213 3.3E-14
20 g10179.t1 Gene3D G3DSA:3.30.60.20 - 221 275 2.7E-23
19 g10179.t1 Gene3D G3DSA:3.40.50.10330 - 319 423 6.4E-7
17 g10179.t1 Gene3D G3DSA:2.60.200.40 - 1348 1512 5.0E-13
22 g10179.t1 Gene3D G3DSA:1.10.150.50 Transcription Factor 1732 1805 4.2E-22
37 g10179.t1 MobiDBLite mobidb-lite consensus disorder prediction 1 21 -
35 g10179.t1 MobiDBLite mobidb-lite consensus disorder prediction 555 580 -
38 g10179.t1 MobiDBLite mobidb-lite consensus disorder prediction 1054 1077 -
36 g10179.t1 MobiDBLite mobidb-lite consensus disorder prediction 1269 1292 -
7 g10179.t1 PANTHER PTHR11255 DIACYLGLYCEROL KINASE 57 631 0.0
9 g10179.t1 PANTHER PTHR11255:SF30 DIACYLGLYCEROL KINASE DELTA 57 631 0.0
8 g10179.t1 PANTHER PTHR11255 DIACYLGLYCEROL KINASE 1313 1725 0.0
10 g10179.t1 PANTHER PTHR11255:SF30 DIACYLGLYCEROL KINASE DELTA 1313 1725 0.0
2 g10179.t1 Pfam PF00169 PH domain 41 131 1.4E-15
6 g10179.t1 Pfam PF00130 Phorbol esters/diacylglycerol binding domain (C1 domain) 151 201 8.9E-10
5 g10179.t1 Pfam PF00130 Phorbol esters/diacylglycerol binding domain (C1 domain) 224 275 3.6E-10
3 g10179.t1 Pfam PF00781 Diacylglycerol kinase catalytic domain 310 416 4.4E-22
1 g10179.t1 Pfam PF00609 Diacylglycerol kinase accessory domain 1351 1500 8.2E-48
4 g10179.t1 Pfam PF00536 SAM domain (Sterile alpha motif) 1741 1802 8.1E-17
27 g10179.t1 ProSitePatterns PS00479 Zinc finger phorbol-ester/DAG-type signature. 151 200 -
28 g10179.t1 ProSitePatterns PS00479 Zinc finger phorbol-ester/DAG-type signature. 224 274 -
43 g10179.t1 ProSiteProfiles PS50003 PH domain profile. 39 132 15.889
41 g10179.t1 ProSiteProfiles PS50081 Zinc finger phorbol-ester/DAG-type profile. 150 200 13.403
40 g10179.t1 ProSiteProfiles PS50081 Zinc finger phorbol-ester/DAG-type profile. 223 274 10.755
42 g10179.t1 ProSiteProfiles PS50146 DAG-kinase catalytic (DAGKc) domain profile. 306 444 38.809
39 g10179.t1 ProSiteProfiles PS50105 SAM domain profile. 1742 1805 19.439
30 g10179.t1 SMART SM00233 PH_update 40 134 8.0E-22
32 g10179.t1 SMART SM00109 c1_12 151 200 3.4E-16
33 g10179.t1 SMART SM00109 c1_12 224 274 1.9E-8
34 g10179.t1 SMART SM00046 dagk_c4a_7 310 436 2.0E-50
29 g10179.t1 SMART SM00045 dagk_c4b_2 1351 1501 3.7E-73
31 g10179.t1 SMART SM00454 SAM_4 1739 1805 8.6E-21
13 g10179.t1 SUPERFAMILY SSF50729 PH domain-like 40 162 8.22E-27
11 g10179.t1 SUPERFAMILY SSF57889 Cysteine-rich domain 148 204 1.57E-13
12 g10179.t1 SUPERFAMILY SSF57889 Cysteine-rich domain 219 278 2.69E-16
16 g10179.t1 SUPERFAMILY SSF111331 NAD kinase/diacylglycerol kinase-like 308 438 7.63E-24
15 g10179.t1 SUPERFAMILY SSF111331 NAD kinase/diacylglycerol kinase-like 1349 1521 1.83E-18
14 g10179.t1 SUPERFAMILY SSF47769 SAM/Pointed domain 1738 1803 5.03E-19

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004143 diacylglycerol kinase activity MF
GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway BP
GO:0003951 NAD+ kinase activity MF
GO:0007165 signal transduction BP
GO:0005515 protein binding MF
GO:0016301 kinase activity MF
GO:0035556 intracellular signal transduction BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values