General information for g10187.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Ubiquitin-like modifier-activating enzyme ATG7.
Parent gene
- The parent gene g10187 is located on chr_1: 8153721..8154823 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10187 | g10187.t3 | isoform | g10187.t3 | 8153262 | 8154823 |
| chr_1 | g10187 | g10187.t3 | exon | g10187.t3.exon1 | 8153262 | 8154095 |
| chr_1 | g10187 | g10187.t3 | cds | g10187.t3.CDS1 | 8153262 | 8153669 |
| chr_1 | g10187 | g10187.t3 | exon | g10187.t3.exon2 | 8154151 | 8154823 |
| chr_1 | g10187 | g10187.t3 | TSS | g10187.t3 | NA | NA |
| chr_1 | g10187 | g10187.t3 | TTS | g10187.t3 | NA | NA |
Sequences
>g10187.t3 Gene=g10187 Length=1507
ATGCGTGACCGAACATTGGATCAACAATGTACAGTCACCAGACCGGGCGTATCAAATATG
GCAGCTTCGATTGCTGTAGAGTTACTGGTATCATTATGTCAACATGAGAAAACTAATGCT
GCACCAGCTTATTATCAAGTAAATAACAAAGATATCAATTCTTCAATTCCTGAAGGTATT
TTGGGTGTATTACCACACTCGATTCGAGGATATTTAAGTACATATGCACACATTTTACCT
GCAACTGAAAGATTTTCCCAATGTATTGCTTGCTCTGAAAAAATACTGAAAGAATATGAT
AAAGAAGGTATCAACTTTTTACTTAAAGTATTTGATTCTGCTGATTATTTGGAGACTGTC
ACTGGAATTGATCAGATGGCTGAAATGGATCATGATGTAAGAAGCTAAATTTATTGTCAA
ATCAATTAATCATGGTGTAATATATTATTTTTATTTTAGATTATTGAAGACTTTTATGAT
TCCGATGAATAAAATTATCATACTTTAAATGATATATTTTTAAGTTAATTTGAAATAAAA
TTTAAATTGGAAAATATTTCATAAAATTTTGAATCATTTTCTTTAATATTAAAGAAATCG
ACGTATGTTACTTTCAGTTTTAGACCATTAAGAGCAAAAATTTTGAATCCTGTAAGCTTA
TCATAAATTGAATGATTCTTTGATGCTCGCAAGAGTGTTGATTTTACAGTTTTAAAAGGA
TATTTTAAAATATGATGACCATTAACAGCTATTTGAAAATATGATACATCCATCAAAATG
CATAGCTGATATTCTTTATTAAGCTCAAATGGAAAATTTGGATATCTCGTTTCATAACTT
ACTCTAGTCTGTCATTCATGCTATTGCATACAATTTCTTTCTCAGCAAAACGTGGATTAA
AATGAAACAATTGTTTTTTGGTTCCCCTTTCATTAAATCGAATGAAAAAAGATCCTTTTT
CATCGCCACTGAATGCAATTTTTAAAATGATTATTGTATTTTGAGAGAAATGACATGGGA
CATCACAACTAAATGCAATTGTAGGCAATTCTTCTTGGTTTGGTGGCCAGCAAAAAGGAT
AAATTTTTCTATGGTCTACTTGCTTAATGCAATCAAAATCTCCAGTGATTTTTATTAATT
TTACTATGCCCGCATTAGAATGATGTTTGTAATTGCAAAGATGTTCATCGTTCAATGCAA
TACGAAAATTTTCTTCTAATGTCAGTATATAAAATTTAAATGACAAGTCATCTGTAATCA
GCTCAATATTATAAATTTGTTCTTCACAATTTTCATTACTATCATTATGGAATGATGATA
AAATTATTTTTTTCTTTATAATATCTGCTTCAATTTGGAGTGGAAATTTTCTATCATTTG
AGTTTTCACAATTATTTAATAGTTGTATTTTAAATGTTTTTGATTCTTCTTCTATCAAAC
CTTTAATGAGAATTATATGACCAACATCAACATGACTTAACAAATGAACAATCACTAATG
AAGTCAT
>g10187.t3 Gene=g10187 Length=135
MRDRTLDQQCTVTRPGVSNMAASIAVELLVSLCQHEKTNAAPAYYQVNNKDINSSIPEGI
LGVLPHSIRGYLSTYAHILPATERFSQCIACSEKILKEYDKEGINFLLKVFDSADYLETV
TGIDQMAEMDHDVRS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g10187.t3 | Gene3D | G3DSA:3.40.50.720 | - | 1 | 135 | 0 |
| 1 | g10187.t3 | PANTHER | PTHR10953 | UBIQUITIN-ACTIVATING ENZYME E1 | 4 | 127 | 0 |
| 2 | g10187.t3 | PANTHER | PTHR10953:SF3 | UBIQUITIN-LIKE MODIFIER-ACTIVATING ENZYME ATG7 | 4 | 127 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed