General information for g10194.t8
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Actin-related protein 3.
Parent gene
- The parent gene g10194 is located on chr_1: 8165528..8166261 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10194 | g10194.t8 | TSS | g10194.t8 | 8163978 | 8163978 |
| chr_1 | g10194 | g10194.t8 | isoform | g10194.t8 | 8164850 | 8166261 |
| chr_1 | g10194 | g10194.t8 | exon | g10194.t8.exon1 | 8164850 | 8165343 |
| chr_1 | g10194 | g10194.t8 | cds | g10194.t8.CDS1 | 8165245 | 8165343 |
| chr_1 | g10194 | g10194.t8 | exon | g10194.t8.exon2 | 8165407 | 8165490 |
| chr_1 | g10194 | g10194.t8 | cds | g10194.t8.CDS2 | 8165407 | 8165490 |
| chr_1 | g10194 | g10194.t8 | exon | g10194.t8.exon3 | 8165553 | 8166261 |
| chr_1 | g10194 | g10194.t8 | cds | g10194.t8.CDS3 | 8165553 | 8165648 |
| chr_1 | g10194 | g10194.t8 | TTS | g10194.t8 | 8166263 | 8166263 |
Sequences
>g10194.t8 Gene=g10194 Length=1287
TCGCTGGTCGAAACATTACCTCATTCATTCAAAGCTTATTACGAGAACGAGAGGTGGGCA
TTCCGCCTGAACAAAGTCTTGAAACTGCCAAAGCAATTAAAGAACGTTTCTGTTACATAT
GTCCCGATATTGCAAAAGAATTTGCAAAATATGATTCAGAACCATCGAAATGGATTAAGA
CTTATGAAGGTATCAATAGTATTACGAAGCAACAATTTAATGTTGATGTAGGATATGAAA
GATTCCTTGGTCCAGAAATTTTCTTTCATCCTGAATTTTCAAATCCTGACTTTACTACGC
CAATATCCGAAATTGTTGATAATGTCATTCAAAATTGTCCGATCGATGTTCGACGACCAT
TGTATAATAATATTGTTTTGAGCGGTGGCTCAACTATGTTTAGAGACTTTGGTAGACGCT
TACAGCGTGATATTAAAAGATCAGTTGATGCTCGACTAAGAATTAGTGAAAATTTAAGTG
AGGGAAGAATTAAGCCCAAACCCATTGATGTGAATGTCATTTCTCACCATATGCAACGTT
ATGCTGTTTGGTTCGGCGGAAGCATGTTGGCGTCAACACCTGAATTTTATCAAGTTTGTC
ATACAAAAGCAGAATACGAGGAATATGGTCCTCGCATTTGCCGTTACAATGCAGTATTCG
GTACAATGACGTAATTTTTTTTGTTTGGTGGTCTTGTTTTACATATAGTATATCAACATC
AACTTAGACATTCCTACTATTGCTGAGCTCAACATCAATCATCAAGAGACACGTTTATTC
TATCATTGATAAAAGCTGAAAATCTTTTTTCTATGAAAATTGTAAAATGCTTTAGAAGAC
TACCGCCAAATTAATTTTTTTGGCGACTTATGAACAAATACAAACTTTTTATAATTTCTT
TATTTAAAAAGTGAAAGTAGGAAAAATAGTGAAAATGCCCCATTTGAAATTAAATATACT
TATTTTAGCCATTTACTATCCCATAATAATCGTCCTTTAAAACTTCATTTTTTTATGTAT
AAGCAACCACAAAGTATATAATATATTTTTTTGTTTCATTCAAAATTTCATTTCACTCTT
TACAATATATATTAATCATAATTTTTTAAAATGATTCGCGTCTATAGTGAAACATGTTGC
ATTTCAATTTAAGTTTAAATATTTTTTATATTATTTTAAATTTACAAGTACGCAAAAAAG
AACTTTCCGTTTTCATTCTCTTAAAGTGATTTTTTTTACTCAATAACTTCTTTTAAAAAA
GTTTCAAATAAAGAATTGTCTTTTGTC
>g10194.t8 Gene=g10194 Length=92
MFRDFGRRLQRDIKRSVDARLRISENLSEGRIKPKPIDVNVISHHMQRYAVWFGGSMLAS
TPEFYQVCHTKAEYEEYGPRICRYNAVFGTMT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g10194.t8 | Coils | Coil | Coil | 91 | 92 | - |
| 6 | g10194.t8 | Gene3D | G3DSA:3.30.420.40 | - | 1 | 60 | 4.7E-23 |
| 5 | g10194.t8 | Gene3D | G3DSA:3.30.420.40 | - | 61 | 79 | 4.7E-23 |
| 2 | g10194.t8 | PANTHER | PTHR11937 | ACTIN | 1 | 84 | 1.1E-33 |
| 3 | g10194.t8 | PANTHER | PTHR11937:SF480 | ACTIN-RELATED PROTEIN 3B | 1 | 84 | 1.1E-33 |
| 1 | g10194.t8 | Pfam | PF00022 | Actin | 2 | 83 | 5.7E-14 |
| 4 | g10194.t8 | SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 1 | 88 | 2.96E-20 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
