General information for g10195.t8
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Glutamate–cysteine ligase.
Parent gene
- The parent gene g10195 is located on chr_1: 8167819..8169830 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10195 | g10195.t8 | TTS | g10195.t8 | 8166281 | 8166281 |
| chr_1 | g10195 | g10195.t8 | isoform | g10195.t8 | 8167166 | 8168242 |
| chr_1 | g10195 | g10195.t8 | exon | g10195.t8.exon1 | 8167166 | 8167752 |
| chr_1 | g10195 | g10195.t8 | cds | g10195.t8.CDS1 | 8167720 | 8167752 |
| chr_1 | g10195 | g10195.t8 | exon | g10195.t8.exon2 | 8167815 | 8168242 |
| chr_1 | g10195 | g10195.t8 | cds | g10195.t8.CDS2 | 8167815 | 8167994 |
| chr_1 | g10195 | g10195.t8 | TSS | g10195.t8 | 8169174 | 8169174 |
Sequences
>g10195.t8 Gene=g10195 Length=1015
GTTTGGGTTGTCCACAATTTTCATATCCATCATATGATGTGCAACCAGACAATCCACAAT
CTGCAGCTCAATCATTATTCTTTCCTGATGAAGCTATATATTCGGGTCATCCACGTTTCA
AAAATTTAACGCGAAATATTAGATTAAGACGAGGTGAAAAGGTGTGCATCAACGTTCCAG
TTTTTAAAGATGAAAACACAAAGTATCCTATTCCTTATTCACTGCCTGAAACGCCTGATC
ATGTTTATATGGATGCGATGGGTTTCGGTATGGGAAATTGTTGCTTGCAATTAACATTTC
AAGCGTGTAATATCAATGAAGCTAGAGTTCTTTATGATCAATTGACTCCTCTCTGTCCAA
TTATGTTAGCATTGACTGCTGCATCTCCCTTATATAGGGGCTTTTTAACTGATATCGATT
GCAGGTTTATGGAATGTTATTTCAGCATCTGTAGATTGTAGAACAAAAGAGGAAAGAGGT
CTTGAACCTCTAAAAGAAAATAAATTTAGAATCAACAAGTCACGCTATGATTCAATCGAT
TCTTATCTATCTGAGGAGGGCGAAAAATACAACGACGTTCCTTTACTTTACAATGAAGAA
GACTATAAAACTTTACGTGAAGGTGGAATTGATCATTTATTGGCACAGCATATTGCCCAT
TTATTTATTCGGGATACTGTTTCTTTATTCAGTGAAAAAATTCATCAAAATGATGAAGAA
GAGACCGATCATTTCGAAAACATTCAATCAACAAATTGGCAAACAATGCGATTTAAACCA
CCACCACCTTCGAGTAGCATTGGCTGGCGAGTCGAATTCCGTCCTTGTGAACTCCAATTA
ACGGATTTTGAGAATGCTGCAATTGTTGTTTTCATTGTATTGTTAACGCGTGTTATACTC
TCATTCAAACTTAATTTCCTTATACCAATCAGTAAAGTTGATGAGAATATGCAAAAGGCA
CAAAAACGAAATGCTTGTAAAGAAGAAAAATTTTGGTTCCGAAGAAATTTCAACG
>g10195.t8 Gene=g10195 Length=70
MDAMGFGMGNCCLQLTFQACNINEARVLYDQLTPLCPIMLALTAASPLYRGFLTDIDCRF
MECYFSICRL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g10195.t8 | Gene3D | G3DSA:3.30.590.50 | - | 1 | 64 | 0 |
| 2 | g10195.t8 | PANTHER | PTHR11164 | GLUTAMATE CYSTEINE LIGASE | 1 | 61 | 0 |
| 1 | g10195.t8 | Pfam | PF03074 | Glutamate-cysteine ligase | 1 | 61 | 0 |
| 3 | g10195.t8 | SUPERFAMILY | SSF55931 | Glutamine synthetase/guanido kinase | 1 | 61 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004357 | glutamate-cysteine ligase activity | MF |
| GO:0003824 | catalytic activity | MF |
| GO:0006750 | glutathione biosynthetic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
