General information for g10195.t9
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Glutamate–cysteine ligase.
Parent gene
- The parent gene g10195 is located on chr_1: 8167819..8169830 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10195 | g10195.t9 | TTS | g10195.t9 | 8166281 | 8166281 |
| chr_1 | g10195 | g10195.t9 | isoform | g10195.t9 | 8167166 | 8168817 |
| chr_1 | g10195 | g10195.t9 | exon | g10195.t9.exon1 | 8167166 | 8167752 |
| chr_1 | g10195 | g10195.t9 | cds | g10195.t9.CDS1 | 8167167 | 8167752 |
| chr_1 | g10195 | g10195.t9 | exon | g10195.t9.exon2 | 8167819 | 8168250 |
| chr_1 | g10195 | g10195.t9 | cds | g10195.t9.CDS2 | 8167819 | 8168250 |
| chr_1 | g10195 | g10195.t9 | exon | g10195.t9.exon3 | 8168308 | 8168614 |
| chr_1 | g10195 | g10195.t9 | cds | g10195.t9.CDS3 | 8168308 | 8168614 |
| chr_1 | g10195 | g10195.t9 | exon | g10195.t9.exon4 | 8168688 | 8168817 |
| chr_1 | g10195 | g10195.t9 | cds | g10195.t9.CDS4 | 8168688 | 8168817 |
| chr_1 | g10195 | g10195.t9 | TSS | g10195.t9 | 8169174 | 8169174 |
Sequences
>g10195.t9 Gene=g10195 Length=1456
ATGGGATTATTGACAGAAGGCAGTCCACTTTCATGGGAGGAGACAAAAAATTTGGCACAG
CATGTGAGAAAACATGGTATCAAGCAGTTTATTAACTTATTTGCAAGATTAAAAGACCGT
CAAGGTGATGTACTAAAATGGGGTGATGAAGTTGAGTATATGATTATAAGGTTTGATGAC
GATAAACAAATAGCACAAGCCTCTTTAAGAGCACTTGAAATACTGAACGTGTTACAAGAA
CCGGAACTGCGCGATCCAGATGGAGTAAAGTCACTTTGGCGCCCTGAATATGCGGCATAT
ATGGTCGAAGGTACACCTGGTAAACCCTATGGAGGGCTATTAGCTCACTTTAATGTTGTT
GAATCATCAATGAAATACCGTAGAGAAGAAGTGTCCAAGTTGTTAAAAGATGGTGAAGAA
GTTATGTCGATTACAAGTTTTCCACGTTTGGGTTGTCCACAATTTTCATATCCATCATAT
GATGTGCAACCAGACAATCCACAATCTGCAGCTCAATCATTATTCTTTCCTGATGAAGCT
ATATATTCGGGTCATCCACGTTTCAAAAATTTAACGCGAAATATTAGATTAAGACGAGGT
GAAAAGGTGTGCATCAACGTTCCAGTTTTTAAAGATGAAAACACAAAGTATCCTATTCCT
TATTCACTGCCTGAAACGCCTGATCATGTTTATATGGATGCGATGGGTTTCGGTATGGGA
AATTGTTGCTTGCAATTAACATTTCAAGCGTGTAATATCAATGAAGCTAGAGTTCTTTAT
GATCAATTGACTCCTCTCTGTCCAATTATGTTAGCATTGACTGCTGCATCTCCCTTATAT
AGGGGCTTTTTAACTGATATCGATTGCAGATGGAATGTTATTTCAGCATCTGTAGATTGT
AGAACAAAAGAGGAAAGAGGTCTTGAACCTCTAAAAGAAAATAAATTTAGAATCAACAAG
TCACGCTATGATTCAATCGATTCTTATCTATCTGAGGAGGGCGAAAAATACAACGACGTT
CCTTTACTTTACAATGAAGAAGACTATAAAACTTTACGTGAAGGTGGAATTGATCATTTA
TTGGCACAGCATATTGCCCATTTATTTATTCGGGATACTGTTTCTTTATTCAGTGAAAAA
ATTCATCAAAATGATGAAGAAGAGACCGATCATTTCGAAAACATTCAATCAACAAATTGG
CAAACAATGCGATTTAAACCACCACCACCTTCGAGTAGCATTGGCTGGCGAGTCGAATTC
CGTCCTTGTGAACTCCAATTAACGGATTTTGAGAATGCTGCAATTGTTGTTTTCATTGTA
TTGTTAACGCGTGTTATACTCTCATTCAAACTTAATTTCCTTATACCAATCAGTAAAGTT
GATGAGAATATGCAAAAGGCACAAAAACGAAATGCTTGTAAAGAAGAAAAATTTTGGTTC
CGAAGAAATTTCAACG
>g10195.t9 Gene=g10195 Length=485
MGLLTEGSPLSWEETKNLAQHVRKHGIKQFINLFARLKDRQGDVLKWGDEVEYMIIRFDD
DKQIAQASLRALEILNVLQEPELRDPDGVKSLWRPEYAAYMVEGTPGKPYGGLLAHFNVV
ESSMKYRREEVSKLLKDGEEVMSITSFPRLGCPQFSYPSYDVQPDNPQSAAQSLFFPDEA
IYSGHPRFKNLTRNIRLRRGEKVCINVPVFKDENTKYPIPYSLPETPDHVYMDAMGFGMG
NCCLQLTFQACNINEARVLYDQLTPLCPIMLALTAASPLYRGFLTDIDCRWNVISASVDC
RTKEERGLEPLKENKFRINKSRYDSIDSYLSEEGEKYNDVPLLYNEEDYKTLREGGIDHL
LAQHIAHLFIRDTVSLFSEKIHQNDEEETDHFENIQSTNWQTMRFKPPPPSSSIGWRVEF
RPCELQLTDFENAAIVVFIVLLTRVILSFKLNFLIPISKVDENMQKAQKRNACKEEKFWF
RRNFN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g10195.t9 | Coils | Coil | Coil | 457 | 477 | - |
| 5 | g10195.t9 | Gene3D | G3DSA:3.30.590.50 | - | 42 | 322 | 6.8E-109 |
| 6 | g10195.t9 | Gene3D | G3DSA:3.30.590.50 | - | 381 | 470 | 7.6E-33 |
| 2 | g10195.t9 | PANTHER | PTHR11164 | GLUTAMATE CYSTEINE LIGASE | 1 | 484 | 8.8E-233 |
| 1 | g10195.t9 | Pfam | PF03074 | Glutamate-cysteine ligase | 230 | 484 | 5.3E-137 |
| 9 | g10195.t9 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 432 | - |
| 10 | g10195.t9 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 433 | 455 | - |
| 8 | g10195.t9 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 456 | 485 | - |
| 4 | g10195.t9 | SUPERFAMILY | SSF55931 | Glutamine synthetase/guanido kinase | 39 | 478 | 3.04E-52 |
| 3 | g10195.t9 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 433 | 455 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004357 | glutamate-cysteine ligase activity | MF |
| GO:0003824 | catalytic activity | MF |
| GO:0006750 | glutathione biosynthetic process | BP |
KEGG
Orthology
- This transcript has been annotated with K11204 (glutamate–cysteine ligase catalytic subunit)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
