General information for g10200.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g10200 is located on chr_1: 8197597..8199312 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10200 | g10200.t3 | TSS | g10200.t3 | 8194536 | 8194536 |
| chr_1 | g10200 | g10200.t3 | isoform | g10200.t3 | 8194537 | 8199312 |
| chr_1 | g10200 | g10200.t3 | exon | g10200.t3.exon1 | 8194537 | 8194655 |
| chr_1 | g10200 | g10200.t3 | exon | g10200.t3.exon2 | 8196243 | 8196422 |
| chr_1 | g10200 | g10200.t3 | exon | g10200.t3.exon3 | 8196625 | 8196680 |
| chr_1 | g10200 | g10200.t3 | cds | g10200.t3.CDS1 | 8196643 | 8196680 |
| chr_1 | g10200 | g10200.t3 | exon | g10200.t3.exon4 | 8196776 | 8196852 |
| chr_1 | g10200 | g10200.t3 | cds | g10200.t3.CDS2 | 8196776 | 8196852 |
| chr_1 | g10200 | g10200.t3 | exon | g10200.t3.exon5 | 8197230 | 8197392 |
| chr_1 | g10200 | g10200.t3 | cds | g10200.t3.CDS3 | 8197230 | 8197392 |
| chr_1 | g10200 | g10200.t3 | exon | g10200.t3.exon6 | 8197735 | 8197956 |
| chr_1 | g10200 | g10200.t3 | cds | g10200.t3.CDS4 | 8197735 | 8197956 |
| chr_1 | g10200 | g10200.t3 | exon | g10200.t3.exon7 | 8198494 | 8199312 |
| chr_1 | g10200 | g10200.t3 | cds | g10200.t3.CDS5 | 8198494 | 8198623 |
| chr_1 | g10200 | g10200.t3 | TTS | g10200.t3 | NA | NA |
Sequences
>g10200.t3 Gene=g10200 Length=1636
AGTTAGTTATTTGCATTCATTCAGTGTAGCTGAGAAAAGTATAAAAAAAGTGGAGCTCGC
GTTCGGTGCAAAGTGAAGAGAGATAAAATTCTATTAAATTTAACTTTCCTCAGCATAGAA
TCTTTGAATGAAAATAATGAGAAGTGAGGAAAGAAGGATGATGATGTGTTTATTGTGTCT
ATTGTTTGGTTTTGCCTCTCTTATTTTTGTTGCGGAAGCATCATTGTATGTAACAGATAT
ACAAATGAACAAAATGATTGAACTATCGATTCGTAAACCTTATTGCCAAATTCATACTGA
TCGTGGATCAATTCAGCATGTGGTTTTATCGATGGATTCACTTAAAGTTAGGCAAACAAG
TGCCAATTGAGACGATACAAACGCTCGAGAATGTATGTCTTGAAGGAAATCAGCTGCGAA
CAGAAATTCAAGACGTTTCTTTTATTATAGGAACGGTATGTTTATTATTTTCTTCATACG
GTTTTATACATTATACTAAATTTTCTGCTTATCATTTCCTTCTTCTTGATGGTGAAGTTA
TGGTGTGGTCCAGGTTAGTATATCAAACTGAAATATCTTACGAAGGTTTACTAAAAGCTC
ATGACAATTGTTATCCTCAAATTGGACCTGGAGAATGCTTGAAAAGTATTTGTAATAAAG
GAACTTTCACAAGACTTCATTGTGATTGTGATGAAAAATTCCGAAGATGCTTAAGTACTC
TGAACACAGACATAGGAAACACGCTTGGTGCCGCTTTCTTTAATGCAGTTCAAGTTACTT
GTTTTGATTTTAGACGACCATGTAGTTCGCATCAAAGAGTTGGTTATAATGAAAGTGAAC
AAGAAGAAATTTGCTCACGATACAAGTTTAGACCATCGCCAAGATATCATGGAAGACCGA
CAACAGGAAATTTACAGAATGGAGTGAAAAGACCTCATTTAATTTAACAACAATTAAGTA
TCATTGCTCAAAAAAATCTTTTAGCTGTTTAAGTCAAATAATTGTGTAGCGATGAGTTTT
TTTGTTATTGTTATTATTATTTTAAATGTCCTAGAAATATTCACTACAGCTGTTATATTT
TTAAAAGACAATGTCAATGCCATGTACAAAGGCATAAAACAAGATTCAGCTTCGCTAGAC
AGAAGTGATTCATTTAAATTTTTCTTCTCTTTATGTGTTTCTCTTCACCACGTGTTGAGA
GAGTGAAGATGTAGAAAAAGAAGAAGAAATATATACTAAGTCATTTCGTATGTATTGTAA
AATTGTACGTATATGCGTCATACTTGCTTGCCGTATAAATTTTATATTTTATTATCTGAA
ATTTTTATTTCTTTAAAATAAAGTTTAGTACCTAAAGCTTATTTTTTTTTTAAAAAAACT
TTTATTTTTTATGTTATAATTCTTCATATTAAAGAAATCTACTTTTAGGACGGAATGATT
TCATTTTTAATTTGAATATTGTTATTAACTTATTTATCTTTATGCATTATAGCTACTTTG
TGCGATTAATCAATTTATATAAAAAACTTATAATCTCTAAATACATCTTATTATATGTAT
AATATAATTTTCAGATCCTGATTTAACGCTAAGGCATTTTGGAGAGATTTCAGGTTAAAT
TATTGTTGCATTTACT
>g10200.t3 Gene=g10200 Length=209
MWFYRWIHLKLGKQVPIETIQTLENVCLEGNQLRTEIQDVSFIIGTVCLLFSSYGFIHYT
KFSAYHFLLLDGEVMVWSRLVYQTEISYEGLLKAHDNCYPQIGPGECLKSICNKGTFTRL
HCDCDEKFRRCLSTLNTDIGNTLGAAFFNAVQVTCFDFRRPCSSHQRVGYNESEQEEICS
RYKFRPSPRYHGRPTTGNLQNGVKRPHLI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g10200.t3 | Gene3D | G3DSA:1.20.90.10 | Phospholipase A2 | 86 | 191 | 8.7E-19 |
| 6 | g10200.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 190 | 209 | - |
| 2 | g10200.t3 | PANTHER | PTHR12253:SF34 | RH14732P | 94 | 193 | 8.3E-27 |
| 3 | g10200.t3 | PANTHER | PTHR12253 | RH14732P | 94 | 193 | 8.3E-27 |
| 1 | g10200.t3 | Pfam | PF05826 | Phospholipase A2 | 93 | 158 | 2.9E-17 |
| 9 | g10200.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 39 | - |
| 10 | g10200.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 40 | 57 | - |
| 8 | g10200.t3 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 58 | 209 | - |
| 5 | g10200.t3 | SUPERFAMILY | SSF48619 | Phospholipase A2, PLA2 | 94 | 187 | 1.97E-18 |
| 4 | g10200.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 40 | 59 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0050482 | arachidonic acid secretion | BP |
| GO:0006644 | phospholipid metabolic process | BP |
| GO:0004623 | phospholipase A2 activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
