General information for g10203.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Cell division control protein 6-like protein.
Parent gene
- The parent gene g10203 is located on chr_1: 8201330..8202665 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10203 | g10203.t1 | TTS | g10203.t1 | 8201259 | 8201259 |
| chr_1 | g10203 | g10203.t1 | isoform | g10203.t1 | 8201330 | 8202665 |
| chr_1 | g10203 | g10203.t1 | exon | g10203.t1.exon1 | 8201330 | 8202417 |
| chr_1 | g10203 | g10203.t1 | cds | g10203.t1.CDS1 | 8201330 | 8202417 |
| chr_1 | g10203 | g10203.t1 | exon | g10203.t1.exon2 | 8202473 | 8202665 |
| chr_1 | g10203 | g10203.t1 | cds | g10203.t1.CDS2 | 8202473 | 8202665 |
| chr_1 | g10203 | g10203.t1 | TSS | g10203.t1 | NA | NA |
Sequences
>g10203.t1 Gene=g10203 Length=1281
ATGCCTCAAATAAACAAATTAAATGTTACAACACCAAAAAGTAACAAATTTCAATTGGCT
CGACGTGCATTAGCAGACAATTTAAATTTTAAACTTCCTGGACGTGAAAAACAATTTGAA
GAATTGACAAGTTTTCTAACTGAATTGATTAGTACAAAATCATCAGGAAGTTTATATGTA
AATGGACCTCCAGGTACAGGTAAAAGTGCGACATTAATGAAAATTGTCAACTCTAAGGAG
TATGAATCAAAATTGAAAATTGCTTTTATCAATTCAACAAGTATCAGTTCAATTGGAGCA
ATTTACAAGAAAATTTGCACAGAACTAAATTTAAAAATTACGGGAAATAGTAATGAAAAG
GAGAGTCTTCAAGCAATTGAAAAATATTTCAATTCCAATCACTCTAAAACAACACTACTG
GTTCTCGATGAAATAGATCAATTATGTACTACGGGCAAAAACCAGAATGTATTGTATCAC
ATTTTCGAATGGCCTTCAATACCAAATTCAAAACTGATATTAATAGGAATAGCAAATAGT
TTAGATTTGACTGATCGTTTATTAGTGCGACTACAAGCAAAATGTGAATTGAAACCAAAA
GTCATGCACTTTCCTGCATATACAAAGGCAGAAATAGTTGAGATTTTCAAATCACGTTTA
GAAGAAAGTGATCTTTTTCCACCTGCAGCTATTCAACTTTTAGCTGCAAAAGTTTCTTCT
GTTTCTGGTGATATTAGAAGAGCTCTGAATATTGGAAAGAGAGTAATTGAATTAGCAGAA
TTAGAAAAAAGAATAAATGACAAGGCTTTAGATTTAAAGCAACTCGATGCTATTGTAGAA
TCTGAATCAATAACTCCGATTATTAATGAACCAAAAGTTCAAATGAAAGAAGTCATGTCA
GTTCTCAATAATGTTTATGGTTGTTCACAATCTTTGGGTGATGATGTCGATGATGCTTTT
CCATTGCAACAAAAAATACTTATTTGTACGATGCTTTTGATAATTAAAAATGACAAGAAC
AAAGATATAACTATTGGTCGATTACATGATGTCTATAGAAAAGTTTGCAAAAATCGAAAC
ATTCACGCTACTGATTTATCGGAGTTTGTTAATCTCTGTTTGCTTGTCGAGACTAAAGGA
ATTTTGCGATTAGCAACTAAAAAAGAACCAAGGTTTCACAAAGTGCATTTGCAGTGGAAT
GAGGATGAAGTTTTTGCTGCATTGAAAGACAAGCAAATGATTACAAATATTCTCAATGAA
AAGTCATTATTAAGTCGCTAA
>g10203.t1 Gene=g10203 Length=426
MPQINKLNVTTPKSNKFQLARRALADNLNFKLPGREKQFEELTSFLTELISTKSSGSLYV
NGPPGTGKSATLMKIVNSKEYESKLKIAFINSTSISSIGAIYKKICTELNLKITGNSNEK
ESLQAIEKYFNSNHSKTTLLVLDEIDQLCTTGKNQNVLYHIFEWPSIPNSKLILIGIANS
LDLTDRLLVRLQAKCELKPKVMHFPAYTKAEIVEIFKSRLEESDLFPPAAIQLLAAKVSS
VSGDIRRALNIGKRVIELAELEKRINDKALDLKQLDAIVESESITPIINEPKVQMKEVMS
VLNNVYGCSQSLGDDVDDAFPLQQKILICTMLLIIKNDKNKDITIGRLHDVYRKVCKNRN
IHATDLSEFVNLCLLVETKGILRLATKKEPRFHKVHLQWNEDEVFAALKDKQMITNILNE
KSLLSR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 12 | g10203.t1 | CDD | cd00009 | AAA | 39 | 191 | 2.01102E-7 |
| 13 | g10203.t1 | CDD | cd08768 | Cdc6_C | 321 | 404 | 8.68487E-16 |
| 10 | g10203.t1 | Coils | Coil | Coil | 258 | 278 | - |
| 7 | g10203.t1 | Gene3D | G3DSA:3.40.50.300 | - | 15 | 195 | 2.2E-47 |
| 8 | g10203.t1 | Gene3D | G3DSA:1.10.8.60 | - | 196 | 289 | 2.6E-6 |
| 9 | g10203.t1 | Gene3D | G3DSA:1.10.10.10 | winged helix repressor DNA binding domain | 320 | 418 | 1.8E-14 |
| 3 | g10203.t1 | PANTHER | PTHR10763 | CELL DIVISION CONTROL PROTEIN 6-RELATED | 13 | 420 | 3.4E-99 |
| 4 | g10203.t1 | PANTHER | PTHR10763:SF26 | CELL DIVISION CONTROL PROTEIN 6 HOMOLOG | 13 | 420 | 3.4E-99 |
| 11 | g10203.t1 | PIRSF | PIRSF001767 | Cdc6 | 2 | 422 | 7.9E-135 |
| 1 | g10203.t1 | Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 59 | 194 | 1.5E-14 |
| 2 | g10203.t1 | Pfam | PF09079 | CDC6, C terminal winged helix domain | 328 | 406 | 4.4E-16 |
| 14 | g10203.t1 | SMART | SM00382 | AAA_5 | 54 | 201 | 1.4E-4 |
| 15 | g10203.t1 | SMART | SM01074 | Cdc6_C_2 | 328 | 408 | 1.2E-14 |
| 6 | g10203.t1 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 32 | 263 | 5.1E-36 |
| 5 | g10203.t1 | SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 318 | 417 | 8.03E-21 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
| GO:0051301 | cell division | BP |
| GO:0006270 | DNA replication initiation | BP |
| GO:0016887 | ATP hydrolysis activity | MF |
KEGG
Orthology
- This transcript has been annotated with K02213 (cell division control protein 6)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
