Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative apoptosis-inducing factor 1, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10206 g10206.t1 TSS g10206.t1 8209898 8209898
chr_1 g10206 g10206.t1 isoform g10206.t1 8209987 8212258
chr_1 g10206 g10206.t1 exon g10206.t1.exon1 8209987 8210071
chr_1 g10206 g10206.t1 cds g10206.t1.CDS1 8209987 8210071
chr_1 g10206 g10206.t1 exon g10206.t1.exon2 8210141 8210184
chr_1 g10206 g10206.t1 cds g10206.t1.CDS2 8210141 8210184
chr_1 g10206 g10206.t1 exon g10206.t1.exon3 8210270 8210431
chr_1 g10206 g10206.t1 cds g10206.t1.CDS3 8210270 8210431
chr_1 g10206 g10206.t1 exon g10206.t1.exon4 8210494 8210575
chr_1 g10206 g10206.t1 cds g10206.t1.CDS4 8210494 8210575
chr_1 g10206 g10206.t1 exon g10206.t1.exon5 8210631 8210959
chr_1 g10206 g10206.t1 cds g10206.t1.CDS5 8210631 8210959
chr_1 g10206 g10206.t1 exon g10206.t1.exon6 8211017 8211749
chr_1 g10206 g10206.t1 cds g10206.t1.CDS6 8211017 8211749
chr_1 g10206 g10206.t1 exon g10206.t1.exon7 8211813 8212258
chr_1 g10206 g10206.t1 cds g10206.t1.CDS7 8211813 8212258
chr_1 g10206 g10206.t1 TTS g10206.t1 8212421 8212421

Sequences

>g10206.t1 Gene=g10206 Length=1881
ATGATTCAATTAGCAGCAAATGTACAGGCGACGCTCTATAGAAATTTTTTGCGGACAAGT
AGCAATAAATCATTCGCAATTAATGCATATTCAATCATCAACCGCCATAAATCAACAACA
AATAATCGCAAACAAAATAATATACAGCAAACCGCATTGAAGCTCGATCCATCAAAAAAG
TTAGAGTGTCCACAACAAACATCATCAAGTACTTCAACACCACCTCCTTCAAATAATTAT
AAAATGATCATTGCTGCTGCTGGCGGAGCAATTATTGGTTTCGGCTCTTTTCTATATTAT
CAAAATCAACAAGACAAAGATACGAAAGTTTCACAATCAAGTTCTAGTACAGAATTTAAA
AAGTCAATAATAACTCGAATTCCTGAAGATTCAAAAAACATTCCTAAGCATGTACCTTAT
CTTCTTATCGGAGGTGGAACGGCGAGTTTTGCTGCTTTTAGAGCCATTAAATCAAATGAT
GCAAGAGCAAAAGTTCTTGTTATATCAGATGAACTTGCGATGCCTTATATGCGACCACCA
CTCTCGAAAGAAATTTGGTCCGACACCGATTTAGGACTTGAAAAGGCTAGATTCAAGCAA
TGGAATGGTGCAGAAAGAAGCATTTTTTATGAACCAGAAGATTTTTATATGCCTATTGAA
AAATTAGAAGAATCAAAGAATGGAGGTGTTTCTGTTATTCAGGGATATACTGTGACAAAA
CTTAATGTTAATGAACAAAAAGTTCTCTTAGATGATGGCACAGAAATTACATATGATAAA
TGTTTGTTAGCTACAGGTAGTTCTCCAAAGACACTTCGCATATTCGATAGCGCATCGCCA
AAAATAAAAGAAAAGATTTTTACATATAAAAGTGTGAAAGATTTCGAACTTGTGAAAAAA
CAAGTGGAAAAATCAAAGAATGTAGCTATTGTGGGAAATGGCTTCTTAGGAAGTGAATTA
GCTTGTGCTTTATCTCATTATGGAACTTTAAATGATTTAAAAGTAGTTCAACTATTTCCT
GAAAGTGGCAATATGGCAAAAGTGTTGCCAAAATATTTGAGTGAATGGGCCACTGAAAGA
ATAAGAGATGTGGGTGTAAATGTTTTACCAAATAGTCAAATAGTTAATGTAGAACTTTTC
AATGGAAACCAAATTAAATTGATACTTAACAACGGAAATAGTATAATAGCTGATTTTGTT
ATTCAAGCAATTGGTTCACAACCAAACACAAATTTAGCAGAAAAGGCAGCACTTGAAATC
GATCAGAAACTCGGTGGCTTTCTTGTCAATGCAGAACTAGAAGCAAGATCAAATCTTTAT
GTAGCTGGAGATGTAGCATGTTTTTATGATCCTCATTTGGGTCGAAGGAGAGTAGAACAT
CATGATCATGCTGTTGTATCAGGAAGACTTGCTGGTGAAAATATGGTTGGTCTAAGAAAA
CCATACAAACATCAGTCAATGTTCTGGTCAGATTTAGGCACAGCTATTGGATATGAGGCA
ATTGGACTAATAGATTCATCTTTAGAAACTGTAGGAATTTTTGCACAAACTAATTCCAAT
GATAATAAAAATGAAATTAAGATTGATGGTGAAAACAAAGAAGCACATTCAGTCGAAAGC
GGCAACTTTAAAAAAGAAAACGGAACTGATAACAAATCTGAAAGCTATAACAAGGGTATT
TTATTTTATATGAAAAATGACAGAATTGTTGGAATTCTTCTATGGAATGTGTTCAACCGT
ATTTCAATTGCAAGAAAAATTTTATCGAGTGAAGAAAAATTTGATGATTTGAATGAAGTT
GCCAAGCTCTTTGACATTTTTGAACAACATCATCAACAAGATAAAGAAGATTTAGAAAAA
GAAAAGGGGCAATTAAAGTAA

>g10206.t1 Gene=g10206 Length=626
MIQLAANVQATLYRNFLRTSSNKSFAINAYSIINRHKSTTNNRKQNNIQQTALKLDPSKK
LECPQQTSSSTSTPPPSNNYKMIIAAAGGAIIGFGSFLYYQNQQDKDTKVSQSSSSTEFK
KSIITRIPEDSKNIPKHVPYLLIGGGTASFAAFRAIKSNDARAKVLVISDELAMPYMRPP
LSKEIWSDTDLGLEKARFKQWNGAERSIFYEPEDFYMPIEKLEESKNGGVSVIQGYTVTK
LNVNEQKVLLDDGTEITYDKCLLATGSSPKTLRIFDSASPKIKEKIFTYKSVKDFELVKK
QVEKSKNVAIVGNGFLGSELACALSHYGTLNDLKVVQLFPESGNMAKVLPKYLSEWATER
IRDVGVNVLPNSQIVNVELFNGNQIKLILNNGNSIIADFVIQAIGSQPNTNLAEKAALEI
DQKLGGFLVNAELEARSNLYVAGDVACFYDPHLGRRRVEHHDHAVVSGRLAGENMVGLRK
PYKHQSMFWSDLGTAIGYEAIGLIDSSLETVGIFAQTNSNDNKNEIKIDGENKEAHSVES
GNFKKENGTDNKSESYNKGILFYMKNDRIVGILLWNVFNRISIARKILSSEEKFDDLNEV
AKLFDIFEQHHQQDKEDLEKEKGQLK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
19 g10206.t1 Coils Coil Coil 608 626 -
16 g10206.t1 Gene3D G3DSA:3.50.50.60 - 141 477 2.0E-107
17 g10206.t1 Gene3D G3DSA:3.50.50.60 - 178 403 2.0E-107
18 g10206.t1 Gene3D G3DSA:3.30.390.30 - 487 613 1.5E-42
24 g10206.t1 MobiDBLite mobidb-lite consensus disorder prediction 52 76 -
26 g10206.t1 MobiDBLite mobidb-lite consensus disorder prediction 61 76 -
25 g10206.t1 MobiDBLite mobidb-lite consensus disorder prediction 530 550 -
3 g10206.t1 PANTHER PTHR43557 APOPTOSIS-INDUCING FACTOR 1 244 606 2.2E-111
4 g10206.t1 PANTHER PTHR43557:SF4 APOPTOSIS-INDUCING FACTOR 1, MITOCHONDRIAL 244 606 2.2E-111
12 g10206.t1 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 139 161 9.7E-10
6 g10206.t1 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 140 159 1.1E-12
8 g10206.t1 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 258 276 1.1E-12
7 g10206.t1 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 307 325 1.1E-12
10 g10206.t1 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 307 332 9.7E-10
5 g10206.t1 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 397 413 1.1E-12
9 g10206.t1 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 398 412 9.7E-10
11 g10206.t1 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 439 446 9.7E-10
1 g10206.t1 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 141 466 1.4E-43
2 g10206.t1 Pfam PF14721 Apoptosis-inducing factor, mitochondrion-associated, C-term 471 589 1.1E-45
20 g10206.t1 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 81 -
22 g10206.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 82 100 -
21 g10206.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 101 626 -
23 g10206.t1 SMART SM01353 AIF_C_2 471 591 1.3E-59
14 g10206.t1 SUPERFAMILY SSF51905 FAD/NAD(P)-binding domain 134 350 9.72E-32
15 g10206.t1 SUPERFAMILY SSF51905 FAD/NAD(P)-binding domain 281 480 6.48E-22
13 g10206.t1 SUPERFAMILY SSF55424 FAD/NAD-linked reductases, dimerisation (C-terminal) domain 484 604 3.68E-38

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0050660 flavin adenine dinucleotide binding MF
GO:0055114 NA NA
GO:0046983 protein dimerization activity MF
GO:0016491 oxidoreductase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values