Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Putative apoptosis-inducing factor 1, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10206 g10206.t6 TSS g10206.t6 8209898 8209898
chr_1 g10206 g10206.t6 isoform g10206.t6 8209987 8211183
chr_1 g10206 g10206.t6 exon g10206.t6.exon1 8209987 8210071
chr_1 g10206 g10206.t6 cds g10206.t6.CDS1 8209987 8210071
chr_1 g10206 g10206.t6 exon g10206.t6.exon2 8210141 8210184
chr_1 g10206 g10206.t6 cds g10206.t6.CDS2 8210141 8210184
chr_1 g10206 g10206.t6 exon g10206.t6.exon3 8210270 8210431
chr_1 g10206 g10206.t6 cds g10206.t6.CDS3 8210270 8210431
chr_1 g10206 g10206.t6 exon g10206.t6.exon4 8210494 8210575
chr_1 g10206 g10206.t6 cds g10206.t6.CDS4 8210494 8210575
chr_1 g10206 g10206.t6 exon g10206.t6.exon5 8210631 8210959
chr_1 g10206 g10206.t6 cds g10206.t6.CDS5 8210631 8210959
chr_1 g10206 g10206.t6 exon g10206.t6.exon6 8211017 8211183
chr_1 g10206 g10206.t6 cds g10206.t6.CDS6 8211017 8211181
chr_1 g10206 g10206.t6 TTS g10206.t6 8211153 8211153

Sequences

>g10206.t6 Gene=g10206 Length=869
ATGATTCAATTAGCAGCAAATGTACAGGCGACGCTCTATAGAAATTTTTTGCGGACAAGT
AGCAATAAATCATTCGCAATTAATGCATATTCAATCATCAACCGCCATAAATCAACAACA
AATAATCGCAAACAAAATAATATACAGCAAACCGCATTGAAGCTCGATCCATCAAAAAAG
TTAGAGTGTCCACAACAAACATCATCAAGTACTTCAACACCACCTCCTTCAAATAATTAT
AAAATGATCATTGCTGCTGCTGGCGGAGCAATTATTGGTTTCGGCTCTTTTCTATATTAT
CAAAATCAACAAGACAAAGATACGAAAGTTTCACAATCAAGTTCTAGTACAGAATTTAAA
AAGTCAATAATAACTCGAATTCCTGAAGATTCAAAAAACATTCCTAAGCATGTACCTTAT
CTTCTTATCGGAGGTGGAACGGCGAGTTTTGCTGCTTTTAGAGCCATTAAATCAAATGAT
GCAAGAGCAAAAGTTCTTGTTATATCAGATGAACTTGCGATGCCTTATATGCGACCACCA
CTCTCGAAAGAAATTTGGTCCGACACCGATTTAGGACTTGAAAAGGCTAGATTCAAGCAA
TGGAATGGTGCAGAAAGAAGCATTTTTTATGAACCAGAAGATTTTTATATGCCTATTGAA
AAATTAGAAGAATCAAAGAATGGAGGTGTTTCTGTTATTCAGGGATATACTGTGACAAAA
CTTAATGTTAATGAACAAAAAGTTCTCTTAGATGATGGCACAGAAATTACATATGATAAA
TGTTTGTTAGCTACAGGTAGTTCTCCAAAGACACTTCGCATATTCGATAGCGCATCGCCA
AAAATAAAAGAAAAGATTTTTACATATAA

>g10206.t6 Gene=g10206 Length=289
MIQLAANVQATLYRNFLRTSSNKSFAINAYSIINRHKSTTNNRKQNNIQQTALKLDPSKK
LECPQQTSSSTSTPPPSNNYKMIIAAAGGAIIGFGSFLYYQNQQDKDTKVSQSSSSTEFK
KSIITRIPEDSKNIPKHVPYLLIGGGTASFAAFRAIKSNDARAKVLVISDELAMPYMRPP
LSKEIWSDTDLGLEKARFKQWNGAERSIFYEPEDFYMPIEKLEESKNGGVSVIQGYTVTK
LNVNEQKVLLDDGTEITYDKCLLATGSSPKTLRIFDSASPKIKEKIFTY

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g10206.t6 Gene3D G3DSA:3.50.50.60 - 139 284 4.2E-33
5 g10206.t6 MobiDBLite mobidb-lite consensus disorder prediction 52 76 -
6 g10206.t6 MobiDBLite mobidb-lite consensus disorder prediction 61 76 -
2 g10206.t6 PANTHER PTHR43557 APOPTOSIS-INDUCING FACTOR 1 139 288 5.4E-27
1 g10206.t6 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 141 274 2.1E-13
9 g10206.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 81 -
10 g10206.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 82 100 -
8 g10206.t6 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 101 289 -
4 g10206.t6 SUPERFAMILY SSF51905 FAD/NAD(P)-binding domain 134 281 5.56E-22
3 g10206.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 82 100 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0055114 NA NA
GO:0016491 oxidoreductase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed