General information for g10206.t7
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Putative apoptosis-inducing factor 1, mitochondrial.
Parent gene
- The parent gene g10206 is located on chr_1: 8212258..8213277 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10206 | g10206.t7 | isoform | g10206.t7 | 8210948 | 8213277 |
| chr_1 | g10206 | g10206.t7 | exon | g10206.t7.exon1 | 8210948 | 8211728 |
| chr_1 | g10206 | g10206.t7 | cds | g10206.t7.CDS1 | 8211347 | 8211728 |
| chr_1 | g10206 | g10206.t7 | exon | g10206.t7.exon2 | 8213187 | 8213277 |
| chr_1 | g10206 | g10206.t7 | cds | g10206.t7.CDS2 | 8213187 | 8213224 |
| chr_1 | g10206 | g10206.t7 | TSS | g10206.t7 | NA | NA |
| chr_1 | g10206 | g10206.t7 | TTS | g10206.t7 | NA | NA |
Sequences
>g10206.t7 Gene=g10206 Length=872
TCTGTTATTCAGGTTGGTACTCTTTATTTTTATTCATTCATTATTCGATCTCAATTTATA
TATTTGAAGGGATATACTGTGACAAAACTTAATGTTAATGAACAAAAAGTTCTCTTAGAT
GATGGCACAGAAATTACATATGATAAATGTTTGTTAGCTACAGGTAGTTCTCCAAAGACA
CTTCGCATATTCGATAGCGCATCGCCAAAAATAAAAGAAAAGATTTTTACATATAAAAGT
GTGAAAGATTTCGAACTTGTGAAAAAACAAGTGGAAAAATCAAAGAATGTAGCTATTGTG
GGAAATGGCTTCTTAGGAAGTGAATTAGCTTGTGCTTTATCTCATTATGGAACTTTAAAT
GATTTAAAAGTAGTTCAACTATTTCCTGAAAGTGGCAATATGGCAAAAGTGTTGCCAAAA
TATTTGAGTGAATGGGCCACTGAAAGAATAAGAGATGTGGGTGTAAATGTTTTACCAAAT
AGTCAAATAGTTAATGTAGAACTTTTCAATGGAAACCAAATTAAATTGATACTTAACAAC
GGAAATAGTATAATAGCTGATTTTGTTATTCAAGCAATTGGTTCACAACCAAACACAAAT
TTAGCAGAAAAGGCAGCACTTGAAATCGATCAGAAACTCGGTGGCTTTCTTGTCAATGCA
GAACTAGAAGCAAGATCAAATCTTTATGTAGCTGGAGATGTAGCATGTTTTTATGATCCT
CATTTGGGTCGAAGGAGAGTAGAACATCATGATCATGCTGTTGTATCAGGAAGACTTGCT
GCACTCTTATATTCCTCCTCTAAGGGATATTTTTCATAATCCCGCGCTGAATGACGATAA
AAACTATCACCCAAAGAATAAATTACATCCAT
>g10206.t7 Gene=g10206 Length=139
MAKVLPKYLSEWATERIRDVGVNVLPNSQIVNVELFNGNQIKLILNNGNSIIADFVIQAI
GSQPNTNLAEKAALEIDQKLGGFLVNAELEARSNLYVAGDVACFYDPHLGRRRVEHHDHA
VVSGRLAALLYSSSKGYFS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g10206.t7 | Gene3D | G3DSA:3.50.50.60 | - | 2 | 136 | 0 |
| 2 | g10206.t7 | PANTHER | PTHR43557 | APOPTOSIS-INDUCING FACTOR 1 | 1 | 128 | 0 |
| 3 | g10206.t7 | PANTHER | PTHR43557:SF4 | APOPTOSIS-INDUCING FACTOR 1, MITOCHONDRIAL | 1 | 128 | 0 |
| 1 | g10206.t7 | Pfam | PF07992 | Pyridine nucleotide-disulphide oxidoreductase | 4 | 122 | 0 |
| 4 | g10206.t7 | SUPERFAMILY | SSF51905 | FAD/NAD(P)-binding domain | 6 | 130 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0055114 | NA | NA |
| GO:0016491 | oxidoreductase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
