Gene loci information

Transcript annotation

  • This transcript has been annotated as Transmembrane GTPase Marf.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10209 g10209.t1 TSS g10209.t1 8217928 8217928
chr_1 g10209 g10209.t1 isoform g10209.t1 8218607 8222309
chr_1 g10209 g10209.t1 exon g10209.t1.exon1 8218607 8218799
chr_1 g10209 g10209.t1 cds g10209.t1.CDS1 8218607 8218799
chr_1 g10209 g10209.t1 exon g10209.t1.exon2 8218860 8219155
chr_1 g10209 g10209.t1 cds g10209.t1.CDS2 8218860 8219155
chr_1 g10209 g10209.t1 exon g10209.t1.exon3 8219233 8219463
chr_1 g10209 g10209.t1 cds g10209.t1.CDS3 8219233 8219463
chr_1 g10209 g10209.t1 exon g10209.t1.exon4 8219534 8219641
chr_1 g10209 g10209.t1 cds g10209.t1.CDS4 8219534 8219641
chr_1 g10209 g10209.t1 exon g10209.t1.exon5 8219910 8220202
chr_1 g10209 g10209.t1 cds g10209.t1.CDS5 8219910 8220202
chr_1 g10209 g10209.t1 exon g10209.t1.exon6 8220269 8220914
chr_1 g10209 g10209.t1 cds g10209.t1.CDS6 8220269 8220914
chr_1 g10209 g10209.t1 exon g10209.t1.exon7 8221620 8221790
chr_1 g10209 g10209.t1 cds g10209.t1.CDS7 8221620 8221790
chr_1 g10209 g10209.t1 exon g10209.t1.exon8 8221847 8222043
chr_1 g10209 g10209.t1 cds g10209.t1.CDS8 8221847 8222043
chr_1 g10209 g10209.t1 exon g10209.t1.exon9 8222108 8222309
chr_1 g10209 g10209.t1 cds g10209.t1.CDS9 8222108 8222309
chr_1 g10209 g10209.t1 TTS g10209.t1 8222554 8222554

Sequences

>g10209.t1 Gene=g10209 Length=2337
ATGGCTGCTTATTTGAACCGTGGAATGTCTATGATTGCGGGCAATGGTTACGAATCGGTC
ATGGATTCCAATTCTCGACAACTGCACAATGTAAATTCACCTCTTCAGATTTTTGTGAAA
GCAAAAAAGAATATCAATGATATTTTTGGCGATATCAGTGACTATGTGGTCGAAACAACT
AATTTTATTGAAGGTCTTGCTGCAGATAGTCAGGCAGATATTGTTGATAAGGCTGAAACA
GAAACTTTTAGAAGTTTTGTATTAAAAATTAACAACATCCGCGAAGTTTTAGCACGAGAC
CATATGAAAGTTGCATTTTTTGGGCGCACATCGAATGGAAAAAGCTCAGTTATCAATGCT
ATGTTAAGAGATAGAATATTGCCCTCTGGTATAGGACACACTACTAATTGCTTTTGTCAA
GTAGAAGGTGTTGATGGTCATGATGCATATCTTATGAGAGAAGGATCAGAAGAGAAATTA
AATGTTACTTCTGTCAAGCAACTTGCAAATGCATTATGTCAAGAGAAGCTCTCAGAGAGT
TCATTAGTGCGCATTTTCTGGCCTCGAGAAAGATGTAGTTTATTAAGAGACGACGTTGTG
TTTGTTGATAGTCCAGGTGTAGACGTTTCACAAAATCTCGACGATTGGATCGATAACCAC
TGTTTAAATGCAGATGTTTTTGTTCTTGTTTTGAATGCTGAATCTACAATGACTTTAGCA
GAAAAATCATTTTTCCATGAAGTATCGACAAAAATTTCAAAACCCAATATATTCATTCTC
AATAATCGTTGGGACGCATCAGCTTCAGAACCAGAATTTTTAGAATCGGTGAAAGCACAA
CATCAAGAGCGTTGCATAGATTTCCTCGTTAAAGAGTTGAAAGTAAGCACAGTTAAAGAA
GCAGAAGAAAGAGTGTTTTTCGTTTCGGCCAGAGAAACGTTAAATGGAAGATTACAGGAA
CAGAATGGTTTACCGGCTCACACTGGTGCCTTAGCAGAAGGATTTCAAGCTCGGTATTTT
GAATTTCAAGATTTTGAAAGAAAATTTGAGGAATGCATTAGCAAAAGTGCTGTGAAAACG
AAATTTGAACAACACAGCTCTCGTGGTAAAACAATTTCAAATGATATGCGTCTCATGTTG
GATAATATTTTTGAAAGGATAAACGATTTGCGTAATAAAAAATTGGAACAAAAGAAGTTA
CTTACAGACAGAATAAGTGCAACTGAGACACAATTAATGGTTGTTACACGAGAAATGAAA
ATGAAAATACATAATATGGTTGAAGAAGTTGAGCAAAAAGTTTCAAAAGCATTGAATGAA
GAAATTTGGCGATTGAATGTACTTGTTGACGAGTTTAATCTTCCTTTTCATACTGATGCA
TTGGTTCTCAATGTATATAAGAAAGAAATGAATGGATATGTTGAAAGTGGTCTTGGTTCT
AATTTAAGGGCTCGTTTGTCAACTGCACTTGCAATGAATATTGAGACAGCACAACGAGAA
ATGACTGATAGAATGACAGCTCTTGTACCAAAGGAGAAGCTTAAGGATCAAACCAATCAA
ATTATTACTGCAAGAAACCAGCCTTTTGAAATGTTATATTCACTTAACTGTCAAAATTTA
TGCAGTGATTTTCAAGAAGATTTAGAGTTTAGATTTTCTTGGGGAATTACAGCTCTCATA
CAGCGTTTCAATGCAAAAAAGGCTGCATCGAAAACAGGAAAATCTGGAGTGGTAGCAAAT
CAATATCGTAATAATGGAAATTTGAACAAGTCGACACAAGCTGTTACACCAAGTGCTGAT
TTGAATTCACCAATATCATTACTGCCACAATTTAATGGTGAATTTACAACTGAAGAACAA
CTATCACTTGTTTCGAGAATTGCAGCTGCTTCAATTGGTTCACAGGGAACAGTTGGTGGA
TTAGTTATTGCTGGAATTTTGTTTAAAACTATTGGATGGAGAGTGCTGTTTGCTGTAGGC
GGTATATACTTTTCAGTTTATGCTTATGAGCGTTTATCATGGACTAATAAAGCCAAAGAA
AGGAAATTCAAGGAACAATATGTAAAGCATGCAACAAGAAAGTTGAAATTGATAGTTGAT
TTGACATCTGCTAATTGTAGTCATCAAGTTCAACAGGAGTTATCTAGTACTTTTGCTAGA
CTTTGTCGTGTTGTTGATTGTAGTCAAAGTGAAATGAATAATGAATTAAAGGATATCGAA
GCATCACTTAATGTTCTCGAAGCAAATCAAAAACAAATAAAACTATTGAGGAATAAAGCT
TCTTTCATTACTAATAAATTAGATACGTTCGAAAATAATTATATAAAATCTAACTAA

>g10209.t1 Gene=g10209 Length=778
MAAYLNRGMSMIAGNGYESVMDSNSRQLHNVNSPLQIFVKAKKNINDIFGDISDYVVETT
NFIEGLAADSQADIVDKAETETFRSFVLKINNIREVLARDHMKVAFFGRTSNGKSSVINA
MLRDRILPSGIGHTTNCFCQVEGVDGHDAYLMREGSEEKLNVTSVKQLANALCQEKLSES
SLVRIFWPRERCSLLRDDVVFVDSPGVDVSQNLDDWIDNHCLNADVFVLVLNAESTMTLA
EKSFFHEVSTKISKPNIFILNNRWDASASEPEFLESVKAQHQERCIDFLVKELKVSTVKE
AEERVFFVSARETLNGRLQEQNGLPAHTGALAEGFQARYFEFQDFERKFEECISKSAVKT
KFEQHSSRGKTISNDMRLMLDNIFERINDLRNKKLEQKKLLTDRISATETQLMVVTREMK
MKIHNMVEEVEQKVSKALNEEIWRLNVLVDEFNLPFHTDALVLNVYKKEMNGYVESGLGS
NLRARLSTALAMNIETAQREMTDRMTALVPKEKLKDQTNQIITARNQPFEMLYSLNCQNL
CSDFQEDLEFRFSWGITALIQRFNAKKAASKTGKSGVVANQYRNNGNLNKSTQAVTPSAD
LNSPISLLPQFNGEFTTEEQLSLVSRIAAASIGSQGTVGGLVIAGILFKTIGWRVLFAVG
GIYFSVYAYERLSWTNKAKERKFKEQYVKHATRKLKLIVDLTSANCSHQVQQELSSTFAR
LCRVVDCSQSEMNNELKDIEASLNVLEANQKQIKLLRNKASFITNKLDTFENNYIKSN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
15 g10209.t1 CDD cd09912 DLP_2 102 353 3.44193E-45
9 g10209.t1 Coils Coil Coil 420 440 -
10 g10209.t1 Coils Coil Coil 729 749 -
11 g10209.t1 Coils Coil Coil 753 773 -
7 g10209.t1 Gene3D G3DSA:3.40.50.300 - 104 358 3.0E-27
8 g10209.t1 Gene3D G3DSA:1.20.5.110 - 715 776 8.0E-18
3 g10209.t1 PANTHER PTHR10465:SF2 MITOFUSIN-1 31 776 1.9E-250
4 g10209.t1 PANTHER PTHR10465 TRANSMEMBRANE GTPASE FZO1 31 776 1.9E-250
2 g10209.t1 Pfam PF00350 Dynamin family 104 262 1.2E-24
1 g10209.t1 Pfam PF04799 fzo-like conserved region 617 776 4.7E-63
13 g10209.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 650 -
14 g10209.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 651 669 -
12 g10209.t1 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 670 778 -
17 g10209.t1 ProSiteProfiles PS51718 Dynamin-type guanine nucleotide-binding (G) domain profile. 98 346 48.505
6 g10209.t1 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 90 313 1.16E-22
5 g10209.t1 SUPERFAMILY SSF111479 Fzo-like conserved region 715 776 1.44E-18
16 g10209.t1 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 650 669 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0008053 mitochondrial fusion BP
GO:0016021 integral component of membrane CC
GO:0005741 mitochondrial outer membrane CC
GO:0005525 GTP binding MF
GO:0003924 GTPase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values