General information for g10209.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Transmembrane GTPase Marf.
Parent gene
- The parent gene g10209 is located on chr_1: 8221858..8222309 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10209 | g10209.t3 | TSS | g10209.t3 | 8217928 | 8217928 |
| chr_1 | g10209 | g10209.t3 | isoform | g10209.t3 | 8218607 | 8219463 |
| chr_1 | g10209 | g10209.t3 | exon | g10209.t3.exon1 | 8218607 | 8218799 |
| chr_1 | g10209 | g10209.t3 | cds | g10209.t3.CDS1 | 8218607 | 8218799 |
| chr_1 | g10209 | g10209.t3 | exon | g10209.t3.exon2 | 8218860 | 8219155 |
| chr_1 | g10209 | g10209.t3 | cds | g10209.t3.CDS2 | 8218860 | 8219155 |
| chr_1 | g10209 | g10209.t3 | exon | g10209.t3.exon3 | 8219233 | 8219463 |
| chr_1 | g10209 | g10209.t3 | cds | g10209.t3.CDS3 | 8219233 | 8219463 |
| chr_1 | g10209 | g10209.t3 | TTS | g10209.t3 | 8220397 | 8220397 |
Sequences
>g10209.t3 Gene=g10209 Length=720
ATGGCTGCTTATTTGAACCGTGGAATGTCTATGATTGCGGGCAATGGTTACGAATCGGTC
ATGGATTCCAATTCTCGACAACTGCACAATGTAAATTCACCTCTTCAGATTTTTGTGAAA
GCAAAAAAGAATATCAATGATATTTTTGGCGATATCAGTGACTATGTGGTCGAAACAACT
AATTTTATTGAAGGTCTTGCTGCAGATAGTCAGGCAGATATTGTTGATAAGGCTGAAACA
GAAACTTTTAGAAGTTTTGTATTAAAAATTAACAACATCCGCGAAGTTTTAGCACGAGAC
CATATGAAAGTTGCATTTTTTGGGCGCACATCGAATGGAAAAAGCTCAGTTATCAATGCT
ATGTTAAGAGATAGAATATTGCCCTCTGGTATAGGACACACTACTAATTGCTTTTGTCAA
GTAGAAGGTGTTGATGGTCATGATGCATATCTTATGAGAGAAGGATCAGAAGAGAAATTA
AATGTTACTTCTGTCAAGCAACTTGCAAATGCATTATGTCAAGAGAAGCTCTCAGAGAGT
TCATTAGTGCGCATTTTCTGGCCTCGAGAAAGATGTAGTTTATTAAGAGACGACGTTGTG
TTTGTTGATAGTCCAGGTGTAGACGTTTCACAAAATCTCGACGATTGGATCGATAACCAC
TGTTTAAATGCAGATGTTTTTGTTCTTGTTTTGAATGCTGAATCTACAATGACTTTAGCA
>g10209.t3 Gene=g10209 Length=240
MAAYLNRGMSMIAGNGYESVMDSNSRQLHNVNSPLQIFVKAKKNINDIFGDISDYVVETT
NFIEGLAADSQADIVDKAETETFRSFVLKINNIREVLARDHMKVAFFGRTSNGKSSVINA
MLRDRILPSGIGHTTNCFCQVEGVDGHDAYLMREGSEEKLNVTSVKQLANALCQEKLSES
SLVRIFWPRERCSLLRDDVVFVDSPGVDVSQNLDDWIDNHCLNADVFVLVLNAESTMTLA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g10209.t3 | Gene3D | G3DSA:3.40.50.300 | - | 104 | 239 | 0.000 |
| 2 | g10209.t3 | PANTHER | PTHR10465:SF2 | MITOFUSIN-1 | 31 | 237 | 0.000 |
| 3 | g10209.t3 | PANTHER | PTHR10465 | TRANSMEMBRANE GTPASE FZO1 | 31 | 237 | 0.000 |
| 1 | g10209.t3 | Pfam | PF00350 | Dynamin family | 104 | 238 | 0.000 |
| 6 | g10209.t3 | ProSiteProfiles | PS51718 | Dynamin-type guanine nucleotide-binding (G) domain profile. | 98 | 240 | 29.951 |
| 4 | g10209.t3 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 90 | 238 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008053 | mitochondrial fusion | BP |
| GO:0016021 | integral component of membrane | CC |
| GO:0005741 | mitochondrial outer membrane | CC |
| GO:0005525 | GTP binding | MF |
| GO:0003924 | GTPase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed