General information for g10209.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g10209 is located on chr_1: 8221858..8222309 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10209 | g10209.t5 | isoform | g10209.t5 | 8221623 | 8222309 |
| chr_1 | g10209 | g10209.t5 | exon | g10209.t5.exon1 | 8221623 | 8221790 |
| chr_1 | g10209 | g10209.t5 | exon | g10209.t5.exon2 | 8221847 | 8222043 |
| chr_1 | g10209 | g10209.t5 | exon | g10209.t5.exon3 | 8222108 | 8222309 |
| chr_1 | g10209 | g10209.t5 | cds | g10209.t5.CDS1 | 8222166 | 8222309 |
| chr_1 | g10209 | g10209.t5 | TTS | g10209.t5 | 8222554 | 8222554 |
| chr_1 | g10209 | g10209.t5 | TSS | g10209.t5 | NA | NA |
Sequences
>g10209.t5 Gene=g10209 Length=567
TCGACACAAGCTGTTACACCAAGTGCTGATTTGAATTCACCAATATCATTACTGCCACAA
TTTAATGGTGAATTTACAACTGAAGAACAACTATCACTTGTTTCGAGAATTGCAGCTGCT
TCAATTGGTTCACAGGGAACAGTTGGTGGATTAGTTATTGCTGGAATTTTGTTTAAAACT
ATTGGATGGAGAGTGCTGTTTGCTGTAGGCGGTATATACTTTTCAGTTTATGCTTATGAG
CGTTTATCATGGACTAATAAAGCCAAAGAAAGGAAATTCAAGGAACAATATGTAAAGCAT
GCAACAAGAAAGTTGAAATTGATAGTTGATTTGACATCTGCTAATTGTAGTCATCAAGTT
CAACAGGAGTTATCTAGTACTTTTGCTAGACTTTGTCGTGTTGTTGATTGTAGTCAAAGT
GAAATGAATAATGAATTAAAGGATATCGAAGCATCACTTAATGTTCTCGAAGCAAATCAA
AAACAAATAAAACTATTGAGGAATAAAGCTTCTTTCATTACTAATAAATTAGATACGTTC
GAAAATAATTATATAAAATCTAACTAA
>g10209.t5 Gene=g10209 Length=47
MNNELKDIEASLNVLEANQKQIKLLRNKASFITNKLDTFENNYIKSN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g10209.t5 | Coils | Coil | Coil | 22 | 42 | - |
| 3 | g10209.t5 | Gene3D | G3DSA:1.20.5.110 | - | 1 | 45 | 1.0E-9 |
| 1 | g10209.t5 | Pfam | PF04799 | fzo-like conserved region | 1 | 45 | 4.8E-9 |
| 2 | g10209.t5 | SUPERFAMILY | SSF111479 | Fzo-like conserved region | 1 | 45 | 1.02E-12 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008053 | mitochondrial fusion | BP |
| GO:0016021 | integral component of membrane | CC |
| GO:0005741 | mitochondrial outer membrane | CC |
| GO:0003924 | GTPase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
