General information for g10226.t10
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g10226 is located on chr_1: 8375542..8383098 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10226 | g10226.t10 | TTS | g10226.t10 | 8353046 | 8353046 |
| chr_1 | g10226 | g10226.t10 | isoform | g10226.t10 | 8353093 | 8359485 |
| chr_1 | g10226 | g10226.t10 | exon | g10226.t10.exon1 | 8353093 | 8353398 |
| chr_1 | g10226 | g10226.t10 | cds | g10226.t10.CDS1 | 8353358 | 8353398 |
| chr_1 | g10226 | g10226.t10 | exon | g10226.t10.exon2 | 8353459 | 8353622 |
| chr_1 | g10226 | g10226.t10 | cds | g10226.t10.CDS2 | 8353459 | 8353622 |
| chr_1 | g10226 | g10226.t10 | exon | g10226.t10.exon3 | 8353680 | 8353801 |
| chr_1 | g10226 | g10226.t10 | cds | g10226.t10.CDS3 | 8353680 | 8353801 |
| chr_1 | g10226 | g10226.t10 | exon | g10226.t10.exon4 | 8355635 | 8355934 |
| chr_1 | g10226 | g10226.t10 | cds | g10226.t10.CDS4 | 8355635 | 8355673 |
| chr_1 | g10226 | g10226.t10 | exon | g10226.t10.exon5 | 8359387 | 8359485 |
| chr_1 | g10226 | g10226.t10 | TSS | g10226.t10 | 8359514 | 8359514 |
Sequences
>g10226.t10 Gene=g10226 Length=991
ATGTGGATATCAATGTAGTCGAAAAAAAAATATTTATCAAAGTAAAATATTCTATTGCTT
GCTTTAAACGTGAATTGTTGTGTTAATTTAAAGCTCAAAAGTCAAAAAAGTTGCTGAAAT
AAATTAATTTAAAAAATAATAATGTCATGAGATGTATTAAAGTGAAGACATTTAATTAAA
ATTTTAATTCGATTTCAATATGTGCTTTTAAAATAAAAATGATTTAAAAAGTAATTGATG
TTAATGTTTAAATATTTAATCGAACTATTGTTTTAAAAGGATAAAAGCAATTAGTGTATT
ATTAAAATTGGATAGCTAGTCACCTATAAAGTTGATATTTTGAAATAAGAGCAAGTGAAT
ATGTGTGAATTACTGAATCCATTGTGTCATCCCAAAGAGGTTCTGTCGATGAGCAAAGAT
GACTATCGCAATGCATCGTTCATCACATCAGGAAGTTTTGATCAAGATGTTCCTATACCA
GATTTGATCGGTACAACAGAGATTCTTAGTGAAGAACATAGAGAAAAACTTTGTGGACAT
TTACCAGCAAGGGCAGAAGGTTATTCTTGGTCACTAGTATTCAGTACATCACAACATGGT
TTTTCATTAAATTCGCTTTATCGTAAAATGCACAAGCTCGAAAGTCCCATTCTCATTGTT
ATTGAAGACACAGATCATAATGTAAGTATTTGGTGCGCTTACATCATGTTCACTTCATGT
ATCTGATCATTTTTACGGAACAGGCGAATCATTGTTATTTAAATTTAATCCAACATTCAA
AGTTTTCCATTGGAGTGGTGAAAATTTATATTTTATTAAAGGCAATCCCGAAAGTCTTGC
AATTGGTGCTGGAGACGGTAAATTTGGTTTATGGCTTGATGGTGACCTCAATCAAGGCAG
ATCACAAAGTTGTAGCACATACTCAAATGAACCATTAGCACCACAAGAAGACTTTGTTAT
AAAGACACTAGAATGTTGGGCGTTTGTTTAA
>g10226.t10 Gene=g10226 Length=121
MCELLNPLCHPKEVLSMSKDDYRNASFITSGSFDQDVPIPDLIGTTEILSEEHREKLCGH
LPARAEGYSWSLVFSTSQHGFSLNSLYRKMHKLESPILIVIEDTDHNVSIWCAYIMFTSC
I
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g10226.t10 | PANTHER | PTHR23354:SF115 | MUSTARD, ISOFORM V | 26 | 108 | 0.000 |
| g10226.t10 | PANTHER | PTHR23354 | NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED | 26 | 108 | 0.000 |
| g10226.t10 | ProSiteProfiles | PS51886 | TLDc domain profile. | 47 | 121 | 13.985 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed