Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Oxidation resistance protein 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10226 g10226.t11 TTS g10226.t11 8353046 8353046
chr_1 g10226 g10226.t11 isoform g10226.t11 8353093 8359485
chr_1 g10226 g10226.t11 exon g10226.t11.exon1 8353093 8353398
chr_1 g10226 g10226.t11 cds g10226.t11.CDS1 8353093 8353398
chr_1 g10226 g10226.t11 exon g10226.t11.exon2 8353463 8353622
chr_1 g10226 g10226.t11 cds g10226.t11.CDS2 8353463 8353622
chr_1 g10226 g10226.t11 exon g10226.t11.exon3 8353680 8353801
chr_1 g10226 g10226.t11 cds g10226.t11.CDS3 8353680 8353801
chr_1 g10226 g10226.t11 exon g10226.t11.exon4 8355635 8355934
chr_1 g10226 g10226.t11 cds g10226.t11.CDS4 8355635 8355673
chr_1 g10226 g10226.t11 exon g10226.t11.exon5 8359387 8359485
chr_1 g10226 g10226.t11 TSS g10226.t11 8359514 8359514

Sequences

>g10226.t11 Gene=g10226 Length=987
ATGTGGATATCAATGTAGTCGAAAAAAAAATATTTATCAAAGTAAAATATTCTATTGCTT
GCTTTAAACGTGAATTGTTGTGTTAATTTAAAGCTCAAAAGTCAAAAAAGTTGCTGAAAT
AAATTAATTTAAAAAATAATAATGTCATGAGATGTATTAAAGTGAAGACATTTAATTAAA
ATTTTAATTCGATTTCAATATGTGCTTTTAAAATAAAAATGATTTAAAAAGTAATTGATG
TTAATGTTTAAATATTTAATCGAACTATTGTTTTAAAAGGATAAAAGCAATTAGTGTATT
ATTAAAATTGGATAGCTAGTCACCTATAAAGTTGATATTTTGAAATAAGAGCAAGTGAAT
ATGTGTGAATTACTGAATCCATTGTGTCATCCCAAAGAGGTTCTGTCGATGAGCAAAGAT
GACTATCGCAATGCATCGTTCATCACATCAGGAAGTTTTGATCAAGATGTTCCTATACCA
GATTTGATCGGTACAACAGAGATTCTTAGTGAAGAACATAGAGAAAAACTTTGTGGACAT
TTACCAGCAAGGGCAGAAGGTTATTCTTGGTCACTAGTATTCAGTACATCACAACATGGT
TTTTCATTAAATTCGCTTTATCGTAAAATGCACAAGCTCGAAAGTCCCATTCTCATTGTT
ATTGAAGACACAGATCATAATGTATTTGGTGCGCTTACATCATGTTCACTTCATGTATCT
GATCATTTTTACGGAACAGGCGAATCATTGTTATTTAAATTTAATCCAACATTCAAAGTT
TTCCATTGGAGTGGTGAAAATTTATATTTTATTAAAGGCAATCCCGAAAGTCTTGCAATT
GGTGCTGGAGACGGTAAATTTGGTTTATGGCTTGATGGTGACCTCAATCAAGGCAGATCA
CAAAGTTGTAGCACATACTCAAATGAACCATTAGCACCACAAGAAGACTTTGTTATAAAG
ACACTAGAATGTTGGGCGTTTGTTTAA

>g10226.t11 Gene=g10226 Length=208
MCELLNPLCHPKEVLSMSKDDYRNASFITSGSFDQDVPIPDLIGTTEILSEEHREKLCGH
LPARAEGYSWSLVFSTSQHGFSLNSLYRKMHKLESPILIVIEDTDHNVFGALTSCSLHVS
DHFYGTGESLLFKFNPTFKVFHWSGENLYFIKGNPESLAIGAGDGKFGLWLDGDLNQGRS
QSCSTYSNEPLAPQEDFVIKTLECWAFV

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g10226.t11 PANTHER PTHR23354:SF115 MUSTARD, ISOFORM V 26 205 0.000
3 g10226.t11 PANTHER PTHR23354 NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED 26 205 0.000
1 g10226.t11 Pfam PF07534 TLD 72 207 0.000
5 g10226.t11 ProSiteProfiles PS51886 TLDc domain profile. 47 208 31.634
4 g10226.t11 SMART SM00584 109ultra 46 208 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed