General information for g10226.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Nuclear receptor coactivator 7.
Parent gene
- The parent gene g10226 is located on chr_1: 8375542..8383098 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10226 | g10226.t2 | TTS | g10226.t2 | 8353046 | 8353046 |
| chr_1 | g10226 | g10226.t2 | isoform | g10226.t2 | 8353093 | 8383098 |
| chr_1 | g10226 | g10226.t2 | exon | g10226.t2.exon1 | 8353093 | 8353398 |
| chr_1 | g10226 | g10226.t2 | cds | g10226.t2.CDS1 | 8353093 | 8353398 |
| chr_1 | g10226 | g10226.t2 | exon | g10226.t2.exon2 | 8353463 | 8353622 |
| chr_1 | g10226 | g10226.t2 | cds | g10226.t2.CDS2 | 8353463 | 8353622 |
| chr_1 | g10226 | g10226.t2 | exon | g10226.t2.exon3 | 8353680 | 8353801 |
| chr_1 | g10226 | g10226.t2 | cds | g10226.t2.CDS3 | 8353680 | 8353801 |
| chr_1 | g10226 | g10226.t2 | exon | g10226.t2.exon4 | 8364326 | 8364379 |
| chr_1 | g10226 | g10226.t2 | cds | g10226.t2.CDS4 | 8364326 | 8364379 |
| chr_1 | g10226 | g10226.t2 | exon | g10226.t2.exon5 | 8364439 | 8364577 |
| chr_1 | g10226 | g10226.t2 | cds | g10226.t2.CDS5 | 8364439 | 8364577 |
| chr_1 | g10226 | g10226.t2 | exon | g10226.t2.exon6 | 8364635 | 8364797 |
| chr_1 | g10226 | g10226.t2 | cds | g10226.t2.CDS6 | 8364635 | 8364797 |
| chr_1 | g10226 | g10226.t2 | exon | g10226.t2.exon7 | 8366120 | 8366283 |
| chr_1 | g10226 | g10226.t2 | cds | g10226.t2.CDS7 | 8366120 | 8366283 |
| chr_1 | g10226 | g10226.t2 | exon | g10226.t2.exon8 | 8367069 | 8367202 |
| chr_1 | g10226 | g10226.t2 | cds | g10226.t2.CDS8 | 8367069 | 8367202 |
| chr_1 | g10226 | g10226.t2 | exon | g10226.t2.exon9 | 8367264 | 8367497 |
| chr_1 | g10226 | g10226.t2 | cds | g10226.t2.CDS9 | 8367264 | 8367497 |
| chr_1 | g10226 | g10226.t2 | exon | g10226.t2.exon10 | 8367559 | 8367775 |
| chr_1 | g10226 | g10226.t2 | cds | g10226.t2.CDS10 | 8367559 | 8367775 |
| chr_1 | g10226 | g10226.t2 | exon | g10226.t2.exon11 | 8368093 | 8368816 |
| chr_1 | g10226 | g10226.t2 | cds | g10226.t2.CDS11 | 8368093 | 8368816 |
| chr_1 | g10226 | g10226.t2 | exon | g10226.t2.exon12 | 8369495 | 8369779 |
| chr_1 | g10226 | g10226.t2 | cds | g10226.t2.CDS12 | 8369495 | 8369779 |
| chr_1 | g10226 | g10226.t2 | exon | g10226.t2.exon13 | 8370041 | 8370153 |
| chr_1 | g10226 | g10226.t2 | cds | g10226.t2.CDS13 | 8370041 | 8370153 |
| chr_1 | g10226 | g10226.t2 | exon | g10226.t2.exon14 | 8372071 | 8372151 |
| chr_1 | g10226 | g10226.t2 | cds | g10226.t2.CDS14 | 8372071 | 8372151 |
| chr_1 | g10226 | g10226.t2 | exon | g10226.t2.exon15 | 8375236 | 8375564 |
| chr_1 | g10226 | g10226.t2 | cds | g10226.t2.CDS15 | 8375236 | 8375564 |
| chr_1 | g10226 | g10226.t2 | exon | g10226.t2.exon16 | 8375635 | 8376028 |
| chr_1 | g10226 | g10226.t2 | cds | g10226.t2.CDS16 | 8375635 | 8376028 |
| chr_1 | g10226 | g10226.t2 | exon | g10226.t2.exon17 | 8382875 | 8383098 |
| chr_1 | g10226 | g10226.t2 | cds | g10226.t2.CDS17 | 8382875 | 8383098 |
| chr_1 | g10226 | g10226.t2 | TSS | g10226.t2 | NA | NA |
Sequences
>g10226.t2 Gene=g10226 Length=3843
ATGGCAGCATCACGTGATGAGCATTCACCAAAACAACGCTCGCCGCTTAGTAAAATTAGT
CCAAGTTTCAAATCCTCATCACCATCACATTCAACTGAATCTCAACAGCATTTAAGTCCT
ACAAAATTCTTCAATGATCAACATATTTCGGGTTCAACACCGAGTCGCCAACGTTCTTTG
CGAGATCGATTGCGCGAGGGAATTAGTAGCAGTCTTACTTGGCATAAAAGTAAACTCAAG
TTAGAAGAAAGAAAAATGTCAAATTTATTGCAAGTACCAGGAAAGAACAGTTCGCGAAAA
AGTTTGAACGGATCTATTTCAACATTAATGGCTCTCGATGAAGAAGAAAAACAAGAGGGT
CATCTTTCACCTACAGAGATTGTTTTAATGTCTGTTCCATCGAACAAGATAGACTTACGT
AAATATTCAGACTCAAATCTACCATCACCAACATTCTGCGATATACCTGTAACGCAAAAG
AAACAAAAGGGGTCGCGAAGGAGTTCGTTAGGACTTGGTTTATTTATGGGCGGAGGAAGT
AGTAAGAATGATACAAAGGGAAATGGTAACAAACGAAGAAGCTCTTTAGCGGCGATTTTG
GGTCGAAGAAATAGTAAGTCTAAGGTAGAAGCTTTAAATGAGAGAAAAGAAAAGTACAAC
AAAACTTCTGAATCAGACACAGAGAACGACCTGTCACAATCAAATGTAAAGATTACAATT
ACACATGATGATGAAGATAATTCAATGACCTCTTCTTTTGAGAAAAAACGTCGAAGAAGT
TCATGGGTTACTAAAATGGAACGCAGACGCAGAAAGGGATTGCCGTCAATGAATAATGAA
ATTGATTATAAAAGTAGTGAATTGATAAATGGTCAATATGATGCGTATATTCGACAAAAA
CGACATTCATGGTGGAATATATTCGTACCAGATAATTTAAAAAATAGGTCAAGAAGATCA
AGTCAGGATGTTGGACAAATTGCTGCTAGTATAGATAAATTTAATGAACAACAACCCCCA
TATCGAAGGAGTAAATCGCGTAGCGTAGATCATGGTTTATCTGCGCCGTTCGTGGATTTG
GACTCATTACGTTCAAAAGTTGAAGGACGTTTTGAAAGCATTGATCGACTGTCTTCAAAA
GGCTCAACCACACCAGTTCCAACAATTCAATACACGGTAAAGGATCGTGATACATTAACT
TCAGTTGCAGCTCGCTTTGATACAACGCCTTCTGAGTTGACACAACTTAATCGATTAGGA
AGCTCCTTTATTTATTCGGGACAAGTATTACTTGTACCCGATAAATCGAAAATTAAAGAT
GATGATAATTCCAGTGAAACAAGTGGTGATACTGAGTGTAGTTCAAAAGAAAAAAGTCGA
AAGGGCTCAAGCAATACAAACGACGATATTCCACAAGAAGAGAAAGATCTTCTTGATAAT
CTACGACCATCATCACCAAAACCGGGACATGTAGAACGTATAGTTACACCATCATCAGAG
GATGATCCAGTTGCTGTTCAAAGATTTTTAAAACTAAATGTTCGTCATATTACTGATGGA
CAAGGTGTAGTTGGTGGAGTTTTATTTGTAACGCCAAATGCTGTTATGTTCGATCCTAAT
GTATCAGATGTACTTGTAATTGAACATGGTCCTGAGAGTTATGGTGTTATTGCTCCTATG
GAATTTATTGTTAATGCCGCTATATTCAATGATATTGCTCATATGCGTGTTGGAAGCAGT
TCTGATCATTCAAATAATGCTAATGAGAAACCTGAAGTGTACTATCCAAAAACGTGCAAT
CGATGTGATACACATTCACCAGGGAAAGATTCATTATTAGTCAAAGATGAAACATTCCCT
GAACTCGGTGCTGGAAGCTCTGTCGATCAAGAAAGTAATTGTTCTACAGAACGCGAAGAT
GGTGATGCTTTTCCTAAAGCATTTGACCGTGAATTAGTGACACCTATTGAGAAAATTCAT
GATGATTCAACTGAAAGTACAGGAATCGGAGGAAATGTGACTGCAGAAATTGAGACAAAA
AAGGACGAGATAAAGAACGAAGATGAAGACGAGCTTGAAGCGATAAAACATGAAGCCGAA
AGGAGAAAAAGTCTCCTAGATCAACATTGGGCCATACCGAGTAAAGACAGACTGAGAAAT
AAATGTAAATGTGATAGATCGGAGGATGATGAAGAGGATGAATCGAATTTGAAAGAGACG
ATAGATGAGAAAAAAGAAGAAATCGTTGCTGAATGTTTGGCAGTAGAAGGTAATGACGAG
AACCATTTAACTCGAACCTCATATCATGATAGTGGCATTGATATCAGAGAAGCAGTTCCA
ACAGTCCCAGTAGTACAAACCAAAAAGGTATATAGTGATGCTGATATTGTTCTTAGTTCA
GATTGGACACCACCATTAACAATTGCTCCAGTATCAACGTCAACAGATACAAAGTCGCAA
TCATCATCTATGCATAGTCATGAAACTGTATCGACCAATAGTGATGGACGAAAAAAAACA
TCTAGTGTAAGCTTTAGTGTTGAAGAAAATGAAAACAATCCTGTATCTGAAAAAGGAACT
GGTGAAGTAAAAAAGAACAAAATGCTAAAACGGTTATCATATCCATTATCATGGGTTGAT
GGTTTTACAAGTGATCCATCGAGTGCAAAAGAGAGTGATTCAGCACCAAATACAAGTGAT
TCCAATCAAAGTGTTTTTTCAAAAGTATTTTCAAGACGATCATCTATTGGAACATTTATA
CGATCACATCCATCGTCGGAGAGTTCTGCTGCATCTTCTTCACAATCGAACAAACCTCAA
AAGCCTCAGGCACCTAAACTAGACTACCGATCAATGGTGTCAATTGACGATATGCCTGCA
CTTTTTGTAAGCTTTGACAAACTCATTCCACGACCAGCAAGAGCATGTCAAGATCCACCG
ATGTATTTACGCTTAAGAATGGGACGACAAATTGGAAAGACAACACCATTGCCGACAACC
GTTATGTCATACGGAAAAAATCGCCTTCGTCCTGAATATTGGTTTAGTATTCCTAAAAAT
AAAGTTGATGAATTATATCGGTTTTTGAATGCATGGGTTCCACAAATTTATGGTGATCTG
GATGAAGAAGCTATAAAGACTCGTGGATTTGAATTAATTCAACATGATACAGAATGGATG
AATAATCGAACGTCTAGCAAAGATGGCGTTGATATAGGAGATGAAATTGGAGAATATACA
AGAGAATCATGGGAGGTTCTGTCGATGAGCAAAGATGACTATCGCAATGCATCGTTCATC
ACATCAGGAAGTTTTGATCAAGATGTTCCTATACCAGATTTGATCGGTACAACAGAGATT
CTTAGTGAAGAACATAGAGAAAAACTTTGTGGACATTTACCAGCAAGGGCAGAAGGTTAT
TCTTGGTCACTAGTATTCAGTACATCACAACATGGTTTTTCATTAAATTCGCTTTATCGT
AAAATGCACAAGCTCGAAAGTCCCATTCTCATTGTTATTGAAGACACAGATCATAATGTA
TTTGGTGCGCTTACATCATGTTCACTTCATGTATCTGATCATTTTTACGGAACAGGCGAA
TCATTGTTATTTAAATTTAATCCAACATTCAAAGTTTTCCATTGGAGTGGTGAAAATTTA
TATTTTATTAAAGGCAATCCCGAAAGTCTTGCAATTGGTGCTGGAGACGGTAAATTTGGT
TTATGGCTTGATGGTGACCTCAATCAAGGCAGATCACAAAGTTGTAGCACATACTCAAAT
GAACCATTAGCACCACAAGAAGACTTTGTTATAAAGACACTAGAATGTTGGGCGTTTGTT
TAA
>g10226.t2 Gene=g10226 Length=1280
MAASRDEHSPKQRSPLSKISPSFKSSSPSHSTESQQHLSPTKFFNDQHISGSTPSRQRSL
RDRLREGISSSLTWHKSKLKLEERKMSNLLQVPGKNSSRKSLNGSISTLMALDEEEKQEG
HLSPTEIVLMSVPSNKIDLRKYSDSNLPSPTFCDIPVTQKKQKGSRRSSLGLGLFMGGGS
SKNDTKGNGNKRRSSLAAILGRRNSKSKVEALNERKEKYNKTSESDTENDLSQSNVKITI
THDDEDNSMTSSFEKKRRRSSWVTKMERRRRKGLPSMNNEIDYKSSELINGQYDAYIRQK
RHSWWNIFVPDNLKNRSRRSSQDVGQIAASIDKFNEQQPPYRRSKSRSVDHGLSAPFVDL
DSLRSKVEGRFESIDRLSSKGSTTPVPTIQYTVKDRDTLTSVAARFDTTPSELTQLNRLG
SSFIYSGQVLLVPDKSKIKDDDNSSETSGDTECSSKEKSRKGSSNTNDDIPQEEKDLLDN
LRPSSPKPGHVERIVTPSSEDDPVAVQRFLKLNVRHITDGQGVVGGVLFVTPNAVMFDPN
VSDVLVIEHGPESYGVIAPMEFIVNAAIFNDIAHMRVGSSSDHSNNANEKPEVYYPKTCN
RCDTHSPGKDSLLVKDETFPELGAGSSVDQESNCSTEREDGDAFPKAFDRELVTPIEKIH
DDSTESTGIGGNVTAEIETKKDEIKNEDEDELEAIKHEAERRKSLLDQHWAIPSKDRLRN
KCKCDRSEDDEEDESNLKETIDEKKEEIVAECLAVEGNDENHLTRTSYHDSGIDIREAVP
TVPVVQTKKVYSDADIVLSSDWTPPLTIAPVSTSTDTKSQSSSMHSHETVSTNSDGRKKT
SSVSFSVEENENNPVSEKGTGEVKKNKMLKRLSYPLSWVDGFTSDPSSAKESDSAPNTSD
SNQSVFSKVFSRRSSIGTFIRSHPSSESSAASSSQSNKPQKPQAPKLDYRSMVSIDDMPA
LFVSFDKLIPRPARACQDPPMYLRLRMGRQIGKTTPLPTTVMSYGKNRLRPEYWFSIPKN
KVDELYRFLNAWVPQIYGDLDEEAIKTRGFELIQHDTEWMNNRTSSKDGVDIGDEIGEYT
RESWEVLSMSKDDYRNASFITSGSFDQDVPIPDLIGTTEILSEEHREKLCGHLPARAEGY
SWSLVFSTSQHGFSLNSLYRKMHKLESPILIVIEDTDHNVFGALTSCSLHVSDHFYGTGE
SLLFKFNPTFKVFHWSGENLYFIKGNPESLAIGAGDGKFGLWLDGDLNQGRSQSCSTYSN
EPLAPQEDFVIKTLECWAFV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g10226.t2 | CDD | cd00118 | LysM | 389 | 432 | 1.16978E-8 |
| 8 | g10226.t2 | Coils | Coil | Coil | 202 | 229 | - |
| 7 | g10226.t2 | Coils | Coil | Coil | 727 | 747 | - |
| 6 | g10226.t2 | Gene3D | G3DSA:3.10.350.10 | - | 376 | 449 | 3.6E-13 |
| 13 | g10226.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 62 | - |
| 19 | g10226.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 57 | - |
| 12 | g10226.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 158 | 233 | - |
| 15 | g10226.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 207 | 225 | - |
| 17 | g10226.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 245 | 271 | - |
| 22 | g10226.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 436 | 473 | - |
| 18 | g10226.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 813 | 864 | - |
| 20 | g10226.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 813 | 857 | - |
| 21 | g10226.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 887 | 906 | - |
| 14 | g10226.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 920 | 942 | - |
| 16 | g10226.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 920 | 946 | - |
| 3 | g10226.t2 | PANTHER | PTHR23354:SF115 | MUSTARD, ISOFORM V | 346 | 1277 | 6.2E-142 |
| 4 | g10226.t2 | PANTHER | PTHR23354 | NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED | 346 | 1277 | 6.2E-142 |
| 1 | g10226.t2 | Pfam | PF01476 | LysM domain | 391 | 433 | 6.8E-11 |
| 2 | g10226.t2 | Pfam | PF07534 | TLD | 1144 | 1279 | 3.2E-36 |
| 23 | g10226.t2 | ProSiteProfiles | PS51782 | LysM domain profile. | 389 | 432 | 12.433 |
| 24 | g10226.t2 | ProSiteProfiles | PS51886 | TLDc domain profile. | 1119 | 1280 | 31.634 |
| 11 | g10226.t2 | SMART | SM00257 | LysM_2 | 390 | 433 | 1.6E-9 |
| 10 | g10226.t2 | SMART | SM00584 | 109ultra | 1118 | 1280 | 1.7E-80 |
| 5 | g10226.t2 | SUPERFAMILY | SSF54106 | LysM domain | 389 | 433 | 2.75E-9 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K25442 (nuclear receptor coactivator 7)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
