General information for g10226.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Oxidation resistance protein 1.
Parent gene
- The parent gene g10226 is located on chr_1: 8375542..8383098 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10226 | g10226.t4 | TTS | g10226.t4 | 8352139 | 8352139 |
| chr_1 | g10226 | g10226.t4 | isoform | g10226.t4 | 8352185 | 8353784 |
| chr_1 | g10226 | g10226.t4 | exon | g10226.t4.exon1 | 8352185 | 8353398 |
| chr_1 | g10226 | g10226.t4 | cds | g10226.t4.CDS1 | 8353093 | 8353398 |
| chr_1 | g10226 | g10226.t4 | exon | g10226.t4.exon2 | 8353463 | 8353622 |
| chr_1 | g10226 | g10226.t4 | cds | g10226.t4.CDS2 | 8353463 | 8353516 |
| chr_1 | g10226 | g10226.t4 | exon | g10226.t4.exon3 | 8353680 | 8353784 |
| chr_1 | g10226 | g10226.t4 | TSS | g10226.t4 | NA | NA |
Sequences
>g10226.t4 Gene=g10226 Length=1479
AGATGACTATCGCAATGCATCGTTCATCACATCAGGAAGTTTTGATCAAGATGTTCCTAT
ACCAGATTTGATCGGTACAACAGAGATTCTTAGTGAAGAACATAGAGAAAAACTTTGTGG
ACATTTACCAGCAAGGGCAGAAGGTTATTCTTGGTCACTAGTATTCAGTACATCACAACA
TGGTTTTTCATTAAATTCGCTTTATCGTAAAATGCACAAGCTCGAAAGTCCCATTCTCAT
TGTTATTGAAGACACAGATCATAATGTATTTGGTGCGCTTACATCATGTTCACTTCATGT
ATCTGATCATTTTTACGGAACAGGCGAATCATTGTTATTTAAATTTAATCCAACATTCAA
AGTTTTCCATTGGAGTGGTGAAAATTTATATTTTATTAAAGGCAATCCCGAAAGTCTTGC
AATTGGTGCTGGAGACGGTAAATTTGGTTTATGGCTTGATGGTGACCTCAATCAAGGCAG
ATCACAAAGTTGTAGCACATACTCAAATGAACCATTAGCACCACAAGAAGACTTTGTTAT
AAAGACACTAGAATGTTGGGCGTTTGTTTAAATAAAATTAAATTAACTTCTAATTATAAT
TGGCGATTTACATGATGGAAAATAAGAAAAGAAAAATATTCATTTTAAGATAAAGAAAAA
CTATTATATTCACAATTGCAATTAATTTTGCAAATAGACTAAAGAAAGTTACTTGATTGA
ATGTTAGATTGCAAAATAATGAAAAGAAAGCTTCTATCCCATAATAATTGTTTTGGGTAT
ACAGTTGGAATAAAAAACACTAAACTAGAATCATTAAAGATTGAGATGATGAAATACAAT
TTTTTCTTAAGTGAGCAGAATATTGTTGAATTAGAAAATGAAGTGAACTTCATTTTCATT
ATTTTTATATTTTGTAGAAGAGAAAATAAATTAAAATTGTTAGGAGAAAAATATTTTTGG
GATAATTTTCCCCTTTTGTTTGCTCCACCGTCTACATCATCCTTCTTAAAAAAGAAGATT
AAGCAAGCAACATGAATGAAATTTAGTAATAGTGATATTTATATCATCATGCATTTGTGT
CGCATGTTAGAGAATTTTTATTAAAGAAATATTTTTCAAGCTACCAGTTTTTATTATTTT
GGAGAGAGATCTTTCGAAAGAAATGAATAAGAAATGGTTTAAATTAACTGAATACGAGAA
AATAAGAATGGAGAGTTTGTGCAAGAGAAGAAGTCAGGCAAAAGTTTATGCTTTTCCTTC
TTATATAAAACAAGATTATTTTTAATGAATTGTGATATTTTTATCATTATTCCTTTTTAA
TTCATGGCTATTACTAACTACTTTTTTTATTATAGTATAAGCATATCATATTAGTAAAAA
TATTTTTGTTCAGATACATAAAAAACCAATTTATTGTGACATTATTTTTCACATTTACAC
CCTCATTCCTTATTATCATGCTTTTCTTTTTTTTGATAG
>g10226.t4 Gene=g10226 Length=119
MHKLESPILIVIEDTDHNVFGALTSCSLHVSDHFYGTGESLLFKFNPTFKVFHWSGENLY
FIKGNPESLAIGAGDGKFGLWLDGDLNQGRSQSCSTYSNEPLAPQEDFVIKTLECWAFV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g10226.t4 | PANTHER | PTHR23354:SF115 | MUSTARD, ISOFORM V | 1 | 116 | 0.00 |
| 3 | g10226.t4 | PANTHER | PTHR23354 | NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED | 1 | 116 | 0.00 |
| 1 | g10226.t4 | Pfam | PF07534 | TLD | 5 | 118 | 0.00 |
| 5 | g10226.t4 | ProSiteProfiles | PS51886 | TLDc domain profile. | 1 | 119 | 22.36 |
| 4 | g10226.t4 | SMART | SM00584 | 109ultra | 1 | 119 | 0.00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
