General information for g10236.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Chitin synthase chs-2.
Parent gene
- The parent gene g10236 is located on chr_1: 8410389..8421073 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10236 | g10236.t1 | isoform | g10236.t1 | 8410389 | 8421073 |
| chr_1 | g10236 | g10236.t1 | exon | g10236.t1.exon1 | 8410389 | 8410504 |
| chr_1 | g10236 | g10236.t1 | cds | g10236.t1.CDS1 | 8410389 | 8410504 |
| chr_1 | g10236 | g10236.t1 | exon | g10236.t1.exon2 | 8413478 | 8414300 |
| chr_1 | g10236 | g10236.t1 | cds | g10236.t1.CDS2 | 8413478 | 8414300 |
| chr_1 | g10236 | g10236.t1 | exon | g10236.t1.exon3 | 8414359 | 8415280 |
| chr_1 | g10236 | g10236.t1 | cds | g10236.t1.CDS3 | 8414359 | 8415280 |
| chr_1 | g10236 | g10236.t1 | exon | g10236.t1.exon4 | 8415342 | 8417076 |
| chr_1 | g10236 | g10236.t1 | cds | g10236.t1.CDS4 | 8415342 | 8417076 |
| chr_1 | g10236 | g10236.t1 | exon | g10236.t1.exon5 | 8417135 | 8417330 |
| chr_1 | g10236 | g10236.t1 | cds | g10236.t1.CDS5 | 8417135 | 8417330 |
| chr_1 | g10236 | g10236.t1 | exon | g10236.t1.exon6 | 8418021 | 8418197 |
| chr_1 | g10236 | g10236.t1 | cds | g10236.t1.CDS6 | 8418021 | 8418197 |
| chr_1 | g10236 | g10236.t1 | exon | g10236.t1.exon7 | 8420142 | 8420345 |
| chr_1 | g10236 | g10236.t1 | cds | g10236.t1.CDS7 | 8420142 | 8420345 |
| chr_1 | g10236 | g10236.t1 | exon | g10236.t1.exon8 | 8420409 | 8420771 |
| chr_1 | g10236 | g10236.t1 | cds | g10236.t1.CDS8 | 8420409 | 8420771 |
| chr_1 | g10236 | g10236.t1 | exon | g10236.t1.exon9 | 8420834 | 8421073 |
| chr_1 | g10236 | g10236.t1 | cds | g10236.t1.CDS9 | 8420834 | 8421073 |
| chr_1 | g10236 | g10236.t1 | TSS | g10236.t1 | NA | NA |
| chr_1 | g10236 | g10236.t1 | TTS | g10236.t1 | NA | NA |
Sequences
>g10236.t1 Gene=g10236 Length=4776
ATGTCTGCAATCAGACATCGGCCCCTGCAGGCGATGCCTGGTGCAGGCGGTGAGAGTGAT
GAAAACTTTTCCGATGACGAGAGTACACCATTGACCCATGATATCTACGGTGGCAGTCAG
CGGACAGTTCATGAAACAAAAGGATGGGATGTGTTTCGCGATCCACCGATAAAAGTTGAT
TCCGGTTCAATGGCCAATCAGGCCTGCATGGAAATAACGGCAAAAATACTCAAACTTGTA
GCGTACATAATTACGTTTATTTTGGTTCTATGTGGAGGCGTCATAGCAAAAGGCTGTGTA
ATTTTTATGTCTGCACAGCTTAAGCGTGACAGAAAAATTCAGTATTGCAATAAAGATTTG
GCACGTGACAAACAATTCATTGCAATTATTCCTGAGGAGGAGCGCATTGCATGGATGTGG
GCTCTTATGATTGCTTTTGCAGTTCCTGAAATTGGTGCACTCATTCGATCAGTGCGTATT
TGTTTTTTCAAGTCATGGAAGTTGCCTCAAAAATCGCACTTCCTTTTTATTTTTCTTATG
GAGTCATTTCATACCATTGGCCTTGTTTTATTAGTCTTTGTTGTGCTACCTGAATTAGAT
TCTGTAAAAGGCGCGATGTTAACAAATTGTCTTTGTGTTGTGCCCGGTATTCTTGGCTTG
CTTTCTTGTACATCAAAAGAAGGCAAGCGAGCAGCAAAAATTATAATGGATTTGGCAGCA
ATTGCTGCACAAGTAACAGGTTTTGTAGTTTGGCCATTGCTTGAAGATCGTCCTGTACTT
TGGATGATTCCTGCCTCTGCATTCATGATTTCATGTGGCTGGTGGGAAAACTATGTTTCA
TCACAAAGTCCATTTGGTATTGTGCGAGCATTGGGACGTGTAAAAGAAGACCTTAAATAT
ACTCGATACTTTGCCTATATGTTCTTGTCAATATGGAAGATTGTGGCCTTCGTTTTTACA
GTCATCATGATTTTATGGTTTGAGGGCGATGACCCCACAAGTATTTTTGGTCTCTTTAGC
AAAGGCTTTGGACCACATAAAATAGTTGTTGAAGAACTTACAACGACCTTCGGCAAATCA
CTTCCTGACTTGATTGATTCCTCACAAATTGGCGATATTGTGCAAATCGATGCATCACAC
AATACAGTCATTCATGTGCTCATAATTCAAATTATTGCCGCTTATATTTGCTACATTTTT
GGTAAATTTGCGTGCAAAATTCTTATTCAGGGCTTCAGTTACGCTTTCCCCGTCAACCTT
ACGATCCCAATTTCAATTTCATTGCTTATCGCAGCATGTGGTATTAGAAATGGAGATCCA
TGCTTCTATCACGGGTCAATTCCCGATTATCTCTTTTTTGAAAGTCCACCAGTATTTAAA
TTAAGCGATTTGGCATCAAAGCAGATGGCTTGGGCTTGGTTGCTTTGGTTATTCTCACAA
TTTTGGATAACACTTCATGTATGGACACCCAAATGTGAACGTTTAGCTACAACTGAAAAA
CTTTTTGTAACACCAATGTACAATGCATTGTTGATTGATCAATCAATGGCGCTCAATAGA
CGACGCGATGATCAAGCTGATGTAAAGACCGAAGATCTTGCTGAAATTGAGAAAGAAAAG
GGTGATGAATACTACGAGACTATCTCTGTCCATACTGATGGCTCTGCTATGCCAAAATCG
AATGTCAAATCGAGTGATCACATCACGAGAATTTATGCTTGCGCAACTATGTGGCATGAA
ACAAAAGACGAAATGATTGAATTTTTGAAATCTATTATGCGTCTTGATGAAGACCAATGT
GCACGTCGTGTTGCTCAAAAATATTTAAGAATTGTTGATCCTGATTATTATGAATTTGAA
ACACATATTTTCTTTGATGATGCTTTCGAAATTTCCGACCATAGCGATGACGATATTCAA
GTGAATCGTTTTGTGAAACTTTTAGTAAGCACAATTGATGAAGCAGCATCAGATGTTCAT
CAAACCAATATTCGATTACGTGCACCAAAGAAATATCCTGCACCATATGGTGGTCGTCTT
GTATGGACATTACCAGGCAAAACTAAAATGATTGCTCATTTGAAAGACAAAGACAGAATT
AGACATCGTAAACGTTGGTCGCAAGTGATGTATATGTATTATTTGCTTGGTCATCGTCTT
ATGGAGCTGCCAATTTCTGTTGATAGAAAGGATGTTATTGCTGAAAATACTTATCTTTTG
ACACTTGATGGTGATATTGATTTCCAACCTAATGCTGTCACATTGCTTATCGATTTGATG
AAAAAGAACAAGAATCTGGGAGCTGCATGTGGTCGTATTCATCCAGTTGGATCTGGTCCT
ATGGTGTGGTATCAAAAGTTCGAATATGCTATTGGTCATTGGCTGCAAAAAGCCACAGAA
CACATGATCGGTTGTGTACTTTGTTCGCCTGGTTGTTTCTCACTCTTCCGTGGCAAGGCA
TTGATGGACGATAATGTCATGAAAAAATATACAACAAGGTCAGATGAAGCACGCCATTAT
GTGCAATACGATCAGGGTGAAGATCGTTGGTTATGTACATTATTACTGCAAAGGGGTTAT
CGAGTCGAATATTCAGCTGCATCAGATGCATATACACATTGTCCAGAAGGTTTCAATGAG
TTTTATAATCAACGTCGTCGATGGGTTCCATCAACAATTGCAAACATTATGGATCTTTTG
GTTGACTATAAACGAACAATTAAAGTTAATGACAACATTTCTATGCTTTACATCTTTTAT
CAAATGCTTCTTATGGGTGGTACAATTCTCGGACCTGGAACAATTTTTCTTATGTTGGTG
GGAGCTTTTGTAGCTGCTTTTAGAATAGACAATTGGACATCATTTCATTACAATATTGTT
CCAATTCTACTATTTATGTTTGTCTGCTTCACATGTAAATCCAACATTCAATTGCTGCTT
GCACAAATTTTATCTACAATGTATGCATTAATTATGATGGCTGTAATTGTCGGTACAGCT
TTACAATTAGGCGAGGATGGTGTCGGCAGTCCATCTGCTATTTTCTTGATGTCAATGGTG
GGGTCATTTTTCATAGCGGCGTGTTTGCATCCGCAAGAATTTTGGTGCATAGCTGCTGGT
ATTATTTATTTGCTTTCAATCCCATCTATGTACTTGCTTTTGATTCTTTATTCAATCATC
AACTTAAATGTCGTCTCATGGGGAACACGTGAGGTTGTTGCGAAAAAGACAAAGAAAGAA
CTCGAACAAGAAAAGAAAGAAGCCGAAGAAGCGGCAAAGAAAGCAAAACAAAAATCATTG
CTTGGATTTTTACAAGGCGGAGTTGGATCAAGTAATGATGAAGAAGGCTCAATCGATATT
TCAGTTGCGGGACTCTTTAGAATTTTATTGTGTACGCATGGAAAGACGAGTGATGAGAAA
GCGCAATTAATTCATATTGCTGACTCACTTGATACAATGAAGAAGAAAATTGAGTCAATT
GAACGACATATTGATCCACATGTTCATCATCCACATGGAAGAAGAAGAACAGCATCAACA
GGTTCAAAAGATCATCATTTAGGTTCTGTTGCTGAAGTGGCATCTGAAGAAGATAGTAGC
AGTTCTGAATCAGAATCAGAATCATCAACTGTTCCACGTAATGAAAGAGATTTCCTTACA
AATCCTTATTGGATTGAAGATCCAGATTTAAAGAAAGGAGAAGTAGATTTCCTATCAAGT
GCTGAAATTCAATTTTGGAAAGATATGATTGATAAATATCTTTTCCCTATTGATCAAGAT
AAAGCAGAACAGGCTCGCATTGCAAGCGATTTGAAAGACCTAAGAAACAAATCAGTATTC
GCCTTCTTCATGTTCAACGCACTATTCGTACTGATTGTGTTCTTGTTGCAACTGAATAAA
GACAAGCTTCACATTCTGTGGCCATTGGCGCCGCGCATAAATGTTACATACGTTGAGGAA
ACTGCTGAGGTGCATATCACAAAGGAATATTTGCAACTTGAACCTATCGGTTTGGTTTTT
GTGTTTTTCTTTGCATTGATTTTGGTTATTCAATTTACTGCCATGTTGTTCCATCGTTTT
GGAACTATTTCGCATATTTTGGCATCAACAGAGTTGAATCTTTCATGCAGCAAGAAATCA
GAGGAACTTTCTCAAGATGCATTAATTGATAAACATGCGGTAGAAATCGTCAAAAACTTA
CAACGACTACAGGGTATTGATGGTGACTACGATAATGATTCCGGTAGTGGACCAGATCGA
ATAGCACGTAGAAAAACTATACAAAATCTAGAGAAGGCGCGACAGCCACGCCGACAAATT
GGTACACTCGATGTGGCCTTCAAAAAGCGTTTCCTTAAATTGACGGCTGCTAATGAGGAG
AACAACTTAGGAACGCCTATTTTAACACGTCGTATGACCATGAGAGCTGAAACGATCCGT
GCATTGGAAGTCAGAAAAAATTCAGTTATGGCAGAAAAGAGAAAGTCACAAATGCAGACT
TTAGGTGCAAATAATGAATATGGAATAACTGGAAATCATAATAATAATCATCAACTACCT
AGTAGACCAGTTCGTAGCTCAAATGCTGGCATTAATGTTAAAGAATTGTTTAATGTCAAT
GGCAGTGCAAATCATAATATTTACGGTACCAACACAGGTGCAGTAAATCAAGCATATGAG
CATGTGGAAGAAGAAGATGGAAATTCAATTAGACTTACACCACGTAATCAAACATCATCA
TGGGCTAGCAACTCAACGAGCACCCAACGACTTTAG
>g10236.t1 Gene=g10236 Length=1591
MSAIRHRPLQAMPGAGGESDENFSDDESTPLTHDIYGGSQRTVHETKGWDVFRDPPIKVD
SGSMANQACMEITAKILKLVAYIITFILVLCGGVIAKGCVIFMSAQLKRDRKIQYCNKDL
ARDKQFIAIIPEEERIAWMWALMIAFAVPEIGALIRSVRICFFKSWKLPQKSHFLFIFLM
ESFHTIGLVLLVFVVLPELDSVKGAMLTNCLCVVPGILGLLSCTSKEGKRAAKIIMDLAA
IAAQVTGFVVWPLLEDRPVLWMIPASAFMISCGWWENYVSSQSPFGIVRALGRVKEDLKY
TRYFAYMFLSIWKIVAFVFTVIMILWFEGDDPTSIFGLFSKGFGPHKIVVEELTTTFGKS
LPDLIDSSQIGDIVQIDASHNTVIHVLIIQIIAAYICYIFGKFACKILIQGFSYAFPVNL
TIPISISLLIAACGIRNGDPCFYHGSIPDYLFFESPPVFKLSDLASKQMAWAWLLWLFSQ
FWITLHVWTPKCERLATTEKLFVTPMYNALLIDQSMALNRRRDDQADVKTEDLAEIEKEK
GDEYYETISVHTDGSAMPKSNVKSSDHITRIYACATMWHETKDEMIEFLKSIMRLDEDQC
ARRVAQKYLRIVDPDYYEFETHIFFDDAFEISDHSDDDIQVNRFVKLLVSTIDEAASDVH
QTNIRLRAPKKYPAPYGGRLVWTLPGKTKMIAHLKDKDRIRHRKRWSQVMYMYYLLGHRL
MELPISVDRKDVIAENTYLLTLDGDIDFQPNAVTLLIDLMKKNKNLGAACGRIHPVGSGP
MVWYQKFEYAIGHWLQKATEHMIGCVLCSPGCFSLFRGKALMDDNVMKKYTTRSDEARHY
VQYDQGEDRWLCTLLLQRGYRVEYSAASDAYTHCPEGFNEFYNQRRRWVPSTIANIMDLL
VDYKRTIKVNDNISMLYIFYQMLLMGGTILGPGTIFLMLVGAFVAAFRIDNWTSFHYNIV
PILLFMFVCFTCKSNIQLLLAQILSTMYALIMMAVIVGTALQLGEDGVGSPSAIFLMSMV
GSFFIAACLHPQEFWCIAAGIIYLLSIPSMYLLLILYSIINLNVVSWGTREVVAKKTKKE
LEQEKKEAEEAAKKAKQKSLLGFLQGGVGSSNDEEGSIDISVAGLFRILLCTHGKTSDEK
AQLIHIADSLDTMKKKIESIERHIDPHVHHPHGRRRTASTGSKDHHLGSVAEVASEEDSS
SSESESESSTVPRNERDFLTNPYWIEDPDLKKGEVDFLSSAEIQFWKDMIDKYLFPIDQD
KAEQARIASDLKDLRNKSVFAFFMFNALFVLIVFLLQLNKDKLHILWPLAPRINVTYVEE
TAEVHITKEYLQLEPIGLVFVFFFALILVIQFTAMLFHRFGTISHILASTELNLSCSKKS
EELSQDALIDKHAVEIVKNLQRLQGIDGDYDNDSGSGPDRIARRKTIQNLEKARQPRRQI
GTLDVAFKKRFLKLTAANEENNLGTPILTRRMTMRAETIRALEVRKNSVMAEKRKSQMQT
LGANNEYGITGNHNNNHQLPSRPVRSSNAGINVKELFNVNGSANHNIYGTNTGAVNQAYE
HVEEEDGNSIRLTPRNQTSSWASNSTSTQRL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 43 | g10236.t1 | CDD | cd04190 | Chitin_synth_C | 574 | 895 | 4.9876E-92 |
| 7 | g10236.t1 | Coils | Coil | Coil | 1071 | 1101 | - |
| 6 | g10236.t1 | Coils | Coil | Coil | 1257 | 1277 | - |
| 5 | g10236.t1 | Gene3D | G3DSA:3.90.550.10 | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 732 | 880 | 1.2E-6 |
| 59 | g10236.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1162 | 1213 | - |
| 61 | g10236.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1562 | 1591 | - |
| 60 | g10236.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1571 | 1591 | - |
| 2 | g10236.t1 | PANTHER | PTHR22914:SF42 | CHITIN SYNTHASE 1 | 45 | 1436 | 0.0 |
| 3 | g10236.t1 | PANTHER | PTHR22914 | CHITIN SYNTHASE | 45 | 1436 | 0.0 |
| 1 | g10236.t1 | Pfam | PF03142 | Chitin synthase | 737 | 940 | 1.6E-25 |
| 12 | g10236.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 78 | - |
| 27 | g10236.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 79 | 103 | - |
| 21 | g10236.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 104 | 135 | - |
| 32 | g10236.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 136 | 155 | - |
| 13 | g10236.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 156 | 174 | - |
| 34 | g10236.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 175 | 196 | - |
| 22 | g10236.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 197 | 201 | - |
| 35 | g10236.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 202 | 222 | - |
| 10 | g10236.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 223 | 233 | - |
| 37 | g10236.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 234 | 254 | - |
| 18 | g10236.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 255 | 259 | - |
| 29 | g10236.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 260 | 279 | - |
| 16 | g10236.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 280 | 302 | - |
| 28 | g10236.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 303 | 327 | - |
| 23 | g10236.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 328 | 381 | - |
| 33 | g10236.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 382 | 400 | - |
| 14 | g10236.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 401 | 411 | - |
| 26 | g10236.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 412 | 432 | - |
| 20 | g10236.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 433 | 469 | - |
| 42 | g10236.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 470 | 488 | - |
| 9 | g10236.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 489 | 922 | - |
| 41 | g10236.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 923 | 949 | - |
| 25 | g10236.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 950 | 954 | - |
| 31 | g10236.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 955 | 972 | - |
| 15 | g10236.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 973 | 978 | - |
| 30 | g10236.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 979 | 1001 | - |
| 17 | g10236.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1002 | 1012 | - |
| 39 | g10236.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1013 | 1029 | - |
| 11 | g10236.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1030 | 1040 | - |
| 38 | g10236.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1041 | 1060 | - |
| 24 | g10236.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1061 | 1278 | - |
| 36 | g10236.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1279 | 1298 | - |
| 8 | g10236.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1299 | 1335 | - |
| 40 | g10236.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1336 | 1357 | - |
| 19 | g10236.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1358 | 1591 | - |
| 4 | g10236.t1 | SUPERFAMILY | SSF53448 | Nucleotide-diphospho-sugar transferases | 735 | 925 | 3.09E-17 |
| 55 | g10236.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 79 | 101 | - |
| 48 | g10236.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 138 | 160 | - |
| 46 | g10236.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 173 | 195 | - |
| 50 | g10236.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 205 | 224 | - |
| 51 | g10236.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 305 | 327 | - |
| 49 | g10236.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 382 | 404 | - |
| 58 | g10236.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 411 | 433 | - |
| 53 | g10236.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 469 | 488 | - |
| 47 | g10236.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 915 | 937 | - |
| 45 | g10236.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 952 | 971 | - |
| 56 | g10236.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 978 | 997 | - |
| 52 | g10236.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1007 | 1029 | - |
| 54 | g10236.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1034 | 1056 | - |
| 57 | g10236.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1279 | 1296 | - |
| 44 | g10236.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1336 | 1358 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004100 | chitin synthase activity | MF |
| GO:0016758 | hexosyltransferase activity | MF |
KEGG
Orthology
- This transcript has been annotated with K00698 (chitin synthase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed