General information for g10244.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative UDP-glucuronosyltransferase 2B14.
Parent gene
- The parent gene g10244 is located on chr_1: 8514299..8515578 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10244 | g10244.t2 | isoform | g10244.t2 | 8513780 | 8514299 |
| chr_1 | g10244 | g10244.t2 | exon | g10244.t2.exon1 | 8513780 | 8514230 |
| chr_1 | g10244 | g10244.t2 | cds | g10244.t2.CDS1 | 8513780 | 8514172 |
| chr_1 | g10244 | g10244.t2 | exon | g10244.t2.exon2 | 8514287 | 8514299 |
| chr_1 | g10244 | g10244.t2 | TSS | g10244.t2 | NA | NA |
| chr_1 | g10244 | g10244.t2 | TTS | g10244.t2 | NA | NA |
Sequences
>g10244.t2 Gene=g10244 Length=464
TCTTGGGCACAACTGAAGCTTTAACTGAAGGTTTGCCTGTTCTAGGAATCCCTATATTCG
GAGATCAAAAAATGAACATGGTAAAAGCAGAAGCTCGAGGATATGGTTTGCATGTGGCTT
ACGATGAACTTAATGAAGAAACTTTTAGTAAAGCTCTTAACGAAATCCTATCTAATCCAA
AATATAAGAAAAATGCAGAAATCATTTCAAAAAGATTCATTGATCGTCCGATGACACCGC
AAGAAACAGTTGTTTATTGGACAGAATATGCTGTTAGACATGATGGCGCTAAACATTTAA
GAGCATCTGGTAATGATTTAAATTTCATTCAATTTCATTCAATTGATGTATACTTAGTTC
TTTTTGTTATTTTTGTTTTTATGTTATCCATAACATTTACTATTACAAAATTGCTATTGA
AAAAGCTATTTTGTAAATCTGATGCAAAACAAAAGAAAAATTGA
>g10244.t2 Gene=g10244 Length=130
MNMVKAEARGYGLHVAYDELNEETFSKALNEILSNPKYKKNAEIISKRFIDRPMTPQETV
VYWTEYAVRHDGAKHLRASGNDLNFIQFHSIDVYLVLFVIFVFMLSITFTITKLLLKKLF
CKSDAKQKKN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g10244.t2 | Gene3D | G3DSA:3.40.50.2000 | Glycogen Phosphorylase B; | 1 | 49 | 2.2E-5 |
| 2 | g10244.t2 | PANTHER | PTHR48043:SF60 | UDP-GLUCURONOSYLTRANSFERASE | 1 | 107 | 1.9E-24 |
| 3 | g10244.t2 | PANTHER | PTHR48043 | EG:EG0003.4 PROTEIN-RELATED | 1 | 107 | 1.9E-24 |
| 1 | g10244.t2 | Pfam | PF00201 | UDP-glucoronosyl and UDP-glucosyl transferase | 1 | 120 | 3.3E-27 |
| 8 | g10244.t2 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 92 | - |
| 9 | g10244.t2 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 93 | 116 | - |
| 7 | g10244.t2 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 117 | 130 | - |
| 5 | g10244.t2 | SUPERFAMILY | SSF53756 | UDP-Glycosyltransferase/glycogen phosphorylase | 1 | 76 | 3.45E-16 |
| 4 | g10244.t2 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 94 | 116 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008194 | UDP-glycosyltransferase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
