General information for g10244.t8
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative UDP-glucuronosyltransferase 2C1 .
Parent gene
- The parent gene g10244 is located on chr_1: 8514299..8515578 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10244 | g10244.t8 | isoform | g10244.t8 | 8514299 | 8515578 |
| chr_1 | g10244 | g10244.t8 | exon | g10244.t8.exon1 | 8514299 | 8514874 |
| chr_1 | g10244 | g10244.t8 | cds | g10244.t8.CDS1 | 8514301 | 8514874 |
| chr_1 | g10244 | g10244.t8 | exon | g10244.t8.exon2 | 8514935 | 8515209 |
| chr_1 | g10244 | g10244.t8 | cds | g10244.t8.CDS2 | 8514935 | 8515155 |
| chr_1 | g10244 | g10244.t8 | exon | g10244.t8.exon3 | 8515357 | 8515578 |
| chr_1 | g10244 | g10244.t8 | TSS | g10244.t8 | NA | NA |
| chr_1 | g10244 | g10244.t8 | TTS | g10244.t8 | NA | NA |
Sequences
>g10244.t8 Gene=g10244 Length=1073
ATGAAGGTTTCTAGTGGAATTTTCATTTTATTTTTGAATTTATTAATAATTAATTATGGT
AGCAGTTTAAAAGTTTTAGGAATACTACCATTTTTTAGTAAATCGCATTTCGCTATCGGT
AGTTCAATTATCAATAGTTTACATTCAGCTGGACATAATATTACAGTAAAAGTTAAAAAA
AATACTTAGGGGCTATTAATATTAGTTATTTAAATACTTTAGAAAGATAATAAAGCTGTA
AACCCGTTTGAATTGGTAAACATACCAAAACCTCTTATGATGTTAATGCTTTATCAATTT
GGTGCAATGGCAGTTGATTTTGTGATGACACATAAAAGTGTAAAAGAGTTGATGGACAGT
AATGAAATGTTTGATGTGTGCATATTAGAAACATTTAATGCTGATGCATTTGTTGGATTT
TCTGATTATTTTAATTGCACTTTAATTTCATACACAACATTTGGAGCAGTCAAATGGATA
GATGCAATGACAGGAAATGAATCACCTTCATCATATGTTCCTCATCCATTTTTGGATTAT
ACTGATAAAATGACATTTACAGAACGATTATGGAATAAGTTTTATAATATTTTGGAAAAT
TTATTATTTAATCTCTATCATTTATCTAAGCAGAGATCATTATATAATAAGTATTTTCCT
AATGCAAAAAAGTCATTCGATGAAATGTTTAAAGGTTCTGCGATAATTTTTCAAAATTCT
CATGTGACTTCATCCTTTCCTCGTCCTTATTTACCGAATATGATAGATATTTGTGGCATT
CATGTGAAACCAGCAAAACTTTTACCCAATGATCTTCAAGAATTTATTGATTCAGCTGAA
GATGGTGTGATCATTTTCACTATGGGTTCTTTTATCAATAGTAAAGATTTTCCAATAGAA
AAACGTGAAGCTATAGTAAAGACTTTTGGTAAATTGAAACAGAAAATAATTTGGAAATAT
GAAAATGACACATTGCCAGACAATCCGGGTAACATAAAAATCAGCTCATGGCTTCCACAG
CGAGATTTGATTGCTCATAAAAATGTAAAGTTATTCATAACACATGGCGGACT
>g10244.t8 Gene=g10244 Length=265
MMLMLYQFGAMAVDFVMTHKSVKELMDSNEMFDVCILETFNADAFVGFSDYFNCTLISYT
TFGAVKWIDAMTGNESPSSYVPHPFLDYTDKMTFTERLWNKFYNILENLLFNLYHLSKQR
SLYNKYFPNAKKSFDEMFKGSAIIFQNSHVTSSFPRPYLPNMIDICGIHVKPAKLLPNDL
QEFIDSAEDGVIIFTMGSFINSKDFPIEKREAIVKTFGKLKQKIIWKYENDTLPDNPGNI
KISSWLPQRDLIAHKNVKLFITHGG
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g10244.t8 | Gene3D | G3DSA:3.40.50.2000 | Glycogen Phosphorylase B; | 171 | 265 | 2.7E-20 |
| 2 | g10244.t8 | PANTHER | PTHR48043 | EG:EG0003.4 PROTEIN-RELATED | 6 | 265 | 2.1E-75 |
| 3 | g10244.t8 | PANTHER | PTHR48043:SF59 | UDP-GLUCURONOSYLTRANSFERASE | 6 | 265 | 2.1E-75 |
| 1 | g10244.t8 | Pfam | PF00201 | UDP-glucoronosyl and UDP-glucosyl transferase | 20 | 265 | 3.7E-41 |
| 7 | g10244.t8 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 18 | - |
| 8 | g10244.t8 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 2 | - |
| 9 | g10244.t8 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 3 | 13 | - |
| 10 | g10244.t8 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 14 | 18 | - |
| 6 | g10244.t8 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 19 | 265 | - |
| 4 | g10244.t8 | SUPERFAMILY | SSF53756 | UDP-Glycosyltransferase/glycogen phosphorylase | 17 | 265 | 2.51E-54 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008194 | UDP-glycosyltransferase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed